View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2568_high_52 (Length: 243)
Name: NF2568_high_52
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_high_52 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 15721907 - 15721682
Alignment:
| Q |
1 |
catacattgaaagtgaagtaatgaaatgcatacacataggtttattgtgtgtacaagaagatgctgcagatcgaccaacaatgtccaccgttgttgtcat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15721907 |
catacattgaaagtgaagtaatgaaatgcatacacataggtttattgtgtgtacaagaagatgcagcagatcgaccaacaatgtccaccgttgttgtcat |
15721808 |
T |
|
| Q |
101 |
gctaggtagtgacacaataacccttccaaatcccaagtcaccggcattttcagtgacaagggtttccgatgaagaaggtacaacttcaaaaagttctaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15721807 |
gctaggtagtgacacaataacccttccaaatcccaagccaccagcattttcagtgacaagggtttccgatgaagaaggtacaacttcaaaaagttctaaa |
15721708 |
T |
|
| Q |
201 |
gataattatgttaatgaagtaccaat |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
15721707 |
gataattatgttaatgaagtaccaat |
15721682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 15696614 - 15696461
Alignment:
| Q |
1 |
catacattgaaagtgaagtaatgaaatgcatacacataggtttattgtgtgtacaagaagatgctgcagatcgaccaacaatgtccaccgttgttgtcat |
100 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||| || |||| || |
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| T |
15696614 |
catacattgaaagtgaggttatgaagtgcatacacattggtttattgtgtgtacaacaagatgctgcagatcgaccaaccatgtccacggtcgttgctat |
15696515 |
T |
|
| Q |
101 |
gctaggtagtgacacaataacccttccaaatcccaagtcaccggcattttcagt |
154 |
Q |
| |
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|||||| ||||||||||| || ||||||| |||||| ||||||||||||||| |
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| T |
15696514 |
gctaggcagtgacacaatgcccattccaaaacccaagcaaccggcattttcagt |
15696461 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 15799171 - 15799018
Alignment:
| Q |
1 |
catacattgaaagtgaagtaatgaaatgcatacacataggtttattgtgtgtacaagaagatgctgcagatcgaccaacaatgtccaccgttgttgtcat |
100 |
Q |
| |
|
||||||||||||||||||| |||| || |||||||| |||||| | ||||||||||||||||| |||||||||||||| ||||||||||||||| ||| |
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|
| T |
15799171 |
catacattgaaagtgaagtcttgaagtgtatacacattggtttactttgtgtacaagaagatgcagcagatcgaccaacgatgtccaccgttgttcgcat |
15799072 |
T |
|
| Q |
101 |
gctaggtagtgacacaataacccttccaaatcccaagtcaccggcattttcagt |
154 |
Q |
| |
|
|||||| ||||||||| || |||||| || |||| | ||| ||||||||||| |
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| T |
15799071 |
gctagggagtgacacagtagaccttccgaaacccacgcaaccagcattttcagt |
15799018 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 154
Target Start/End: Complemental strand, 15804783 - 15804632
Alignment:
| Q |
3 |
tacattgaaagtgaagtaatgaaatgcatacacataggtttattgtgtgtacaagaagatgctgcagatcgaccaacaatgtccaccgttgttgtcatgc |
102 |
Q |
| |
|
||||||||||||||||| |||| || |||||||| |||||| | ||||||||||||||||| |||||||||||||| ||||||||||||||| ||||| |
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|
| T |
15804783 |
tacattgaaagtgaagtcttgaagtgtatacacattggtttactttgtgtacaagaagatgcagcagatcgaccaaccatgtccaccgttgttagcatgc |
15804684 |
T |
|
| Q |
103 |
taggtagtgacacaataacccttccaaatcccaagtcaccggcattttcagt |
154 |
Q |
| |
|
|||| ||||| ||| || ||||||||| |||| | ||| ||||||||||| |
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|
| T |
15804683 |
tagggagtgagacagtagaccttccaaaacccacgcaaccagcattttcagt |
15804632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 15710827 - 15710710
Alignment:
| Q |
1 |
catacattgaaagtgaagtaatgaaatgcatacacataggtttattgtgtgtacaagaagatgctgcagatcgaccaacaatgtccaccgttgttgtcat |
100 |
Q |
| |
|
||||||| ||||||||||| ||||| ||| ||||||| |||||||||||||| || ||||| ||||||||||||||||| ||||||||| ||||| |||| |
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|
| T |
15710827 |
catacatcgaaagtgaagttatgaagtgcgtacacatcggtttattgtgtgtgcaggaagacgctgcagatcgaccaaccatgtccaccattgttctcat |
15710728 |
T |
|
| Q |
101 |
gctaggtagtgacacaat |
118 |
Q |
| |
|
|||||| || |||||||| |
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|
| T |
15710727 |
gctaggcagcgacacaat |
15710710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 15703214 - 15702992
Alignment:
| Q |
1 |
catacattgaaagtgaagtaatgaaatgcatacacataggtttattgtgtgtacaagaagatgctgcagatcgaccaacaatgtccaccgttgttgtcat |
100 |
Q |
| |
|
|||||||||||||||| || || ||||||||||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||||| ||| |||| |
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|
| T |
15703214 |
catacattgaaagtgaggttctgcgatgcatacacaatggtttattgtgcatacaagaagatgcagcagatcgaccaaccatgtccaccgtcgttctcat |
15703115 |
T |
|
| Q |
101 |
gctaggtagtgacacaataacccttccaaatcccaagtcaccggcattttcagtgacaagggtttccgatgaagaaggtacaacttcaaaaagttctaag |
200 |
Q |
| |
|
|||||| ||||||||||| | ||||| || |||| | | | ||||||||||| ||| | || | ||||| | ||| |||||||||||| ||| |
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|
| T |
15703114 |
gctaggaagtgacacaatgcctcttccgaaacccatgaaagcagcattttcagttggaagaatgtcaaacctagaagattcaaattcaaaaagttccaag |
15703015 |
T |
|
| Q |
201 |
gataattatgttaatgaagtacc |
223 |
Q |
| |
|
|||||||||||| |||||||||| |
|
|
| T |
15703014 |
gataattatgttgatgaagtacc |
15702992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 154
Target Start/End: Complemental strand, 15763751 - 15763600
Alignment:
| Q |
3 |
tacattgaaagtgaagtaatgaaatgcatacacataggtttattgtgtgtacaagaagatgctgcagatcgaccaacaatgtccaccgttgttgtcatgc |
102 |
Q |
| |
|
||||||||||||||||| |||| || |||||||| |||||||||||||||||||||||||| |||||||||||||| || ||||| || ||| |||| |
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|
| T |
15763751 |
tacattgaaagtgaagtcttgaagtgtatacacattggtttattgtgtgtacaagaagatgcagcagatcgaccaaccatttccactgtcgttcgtatgc |
15763652 |
T |
|
| Q |
103 |
taggtagtgacacaataacccttccaaatcccaagtcaccggcattttcagt |
154 |
Q |
| |
|
|||| ||||| ||| || | |||||| | ||||| ||| ||||||||||| |
|
|
| T |
15763651 |
tagggagtgatacagtagctcttccacaacccaatcaaccagcattttcagt |
15763600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 136
Target Start/End: Complemental strand, 15692193 - 15692084
Alignment:
| Q |
27 |
tgcatacacataggtttattgtgtgtacaagaagatgctgcagatcgaccaacaatgtccaccgttgttgtcatgctaggtagtgacacaataacccttc |
126 |
Q |
| |
|
|||||| |||||||| | |||||||| ||||||||||| |||||| ||||||| ||||| || |||||||| ||| | | |||||||||||| ||||||| |
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|
| T |
15692193 |
tgcataaacataggtcttttgtgtgttcaagaagatgcggcagatagaccaaccatgtcaactgttgttgtaatgttggctagtgacacaatgacccttc |
15692094 |
T |
|
| Q |
127 |
caaatcccaa |
136 |
Q |
| |
|
|||| ||||| |
|
|
| T |
15692093 |
caaaacccaa |
15692084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 15812565 - 15812437
Alignment:
| Q |
7 |
ttgaaagtgaagtaatgaaatgcatacacataggtttattgtgtgtacaagaagatgctgcagatcgaccaacaatgtccaccgttgttgtcatgctagg |
106 |
Q |
| |
|
|||| |||||||| ||||| || || ||||| ||||||||||| ||||||||||| || |||||| | ||||| ||||||| ||||||| ||||||||| |
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|
| T |
15812565 |
ttgagagtgaagtcatgaagtgtattcacattggtttattgtgcgtacaagaagacgcagcagataggccaacgatgtccatcgttgttcgcatgctagg |
15812466 |
T |
|
| Q |
107 |
tagtgacacaataacccttccaaatccca |
135 |
Q |
| |
|
||||||||| || ||||||||| |||| |
|
|
| T |
15812465 |
gagtgacacagtagaccttccaaaaccca |
15812437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 15696437 - 15696395
Alignment:
| Q |
181 |
caacttcaaaaagttctaaggataattatgttaatgaagtacc |
223 |
Q |
| |
|
|||||| |||||||| |||||||||||||||| |||||||||| |
|
|
| T |
15696437 |
caactttaaaaagttataaggataattatgttgatgaagtacc |
15696395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 3095656 - 3095775
Alignment:
| Q |
14 |
tgaagtaatgaaatgcatacacataggtttattgtgtgtacaagaagatgctgcagatcgaccaacaatgtccaccgttgttgtcatgctaggtagtgac |
113 |
Q |
| |
|
|||||| || |||||||||||||| ||||| |||||||||||||||||||| | ||| ||||||| ||||||| |||||||| ||||||| |||||| |
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|
| T |
3095656 |
tgaagttattaaatgcatacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgac |
3095755 |
T |
|
| Q |
114 |
acaataacccttccaaatcc |
133 |
Q |
| |
|
||||| || ||||| ||||| |
|
|
| T |
3095756 |
acaatgacacttcccaatcc |
3095775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 3081219 - 3081338
Alignment:
| Q |
14 |
tgaagtaatgaaatgcatacacataggtttattgtgtgtacaagaagatgctgcagatcgaccaacaatgtccaccgttgttgtcatgctaggtagtgac |
113 |
Q |
| |
|
|||||| || |||||||||||||| ||||| || ||||||||||||||||| | ||| ||||||| ||||||| |||||||| ||||||| |||||| |
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|
| T |
3081219 |
tgaagttattaaatgcatacacattggtttgttatgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgac |
3081318 |
T |
|
| Q |
114 |
acaataacccttccaaatcc |
133 |
Q |
| |
|
||||| || ||||| ||||| |
|
|
| T |
3081319 |
acaatgacacttcccaatcc |
3081338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 4547275 - 4547156
Alignment:
| Q |
14 |
tgaagtaatgaaatgcatacacataggtttattgtgtgtacaagaagatgctgcagatcgaccaacaatgtccaccgttgttgtcatgctaggtagtgac |
113 |
Q |
| |
|
|||||| ||||| || ||||| || ||||| |||||||||||||||||||| | ||| ||||||| ||||||| |||||||||||||| | |||||| |
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|
| T |
4547275 |
tgaagttatgaagtgtatacatattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtcatgctggcaagtgac |
4547176 |
T |
|
| Q |
114 |
acaataacccttccaaatcc |
133 |
Q |
| |
|
|||||| | ||||| ||||| |
|
|
| T |
4547175 |
acaatagcacttcccaatcc |
4547156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 3103824 - 3103866
Alignment:
| Q |
43 |
tattgtgtgtacaagaagatgctgcagatcgaccaacaatgtc |
85 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||| |||||||| |
|
|
| T |
3103824 |
tattgtgtgtacaagaagatgcagcagatagacctacaatgtc |
3103866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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