View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2568_high_55 (Length: 237)
Name: NF2568_high_55
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_high_55 |
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Alignment Details
Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 115 - 216
Target Start/End: Original strand, 8392587 - 8392688
Alignment:
| Q |
115 |
gtttgaacaacattaataagtgaaaataattggatctgacaacagagaaaatccccatcgttcttaccatacagtctgattaaatatttgagaatacaaa |
214 |
Q |
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| T |
8392587 |
gtttgaaaaacattaataagtgaaaataattggatctgacaacagagaaaatccccatcgttcttaccaaacagtctgattaaatatttgagaatacaaa |
8392686 |
T |
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| Q |
215 |
ta |
216 |
Q |
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|| |
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| T |
8392687 |
ta |
8392688 |
T |
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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 8392480 - 8392514
Alignment:
| Q |
1 |
tttcctccgtgatgcctttcatgcatgtgcaatca |
35 |
Q |
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| T |
8392480 |
tttcctccgtgatggctttcatgcatgtgcaatca |
8392514 |
T |
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