View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2568_high_58 (Length: 236)
Name: NF2568_high_58
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_high_58 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 10 - 216
Target Start/End: Complemental strand, 41381073 - 41380867
Alignment:
| Q |
10 |
agtgagatgaagtagtgtacaactttggatttttaatgactacgaatgatgtattttcttttggttttatgtgtttgcattgnnnnnnnncagcattaac |
109 |
Q |
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| T |
41381073 |
agtgaaataaagtagtgtacaactttggatttttaatgactacgaatgatgtattttcttttggttttatgtgtttgcattgttttttttcagcattaac |
41380974 |
T |
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| Q |
110 |
aatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaagccatgagaaa |
209 |
Q |
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| T |
41380973 |
aatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaagccatgagaaa |
41380874 |
T |
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| Q |
210 |
ttgtaaa |
216 |
Q |
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||||||| |
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| T |
41380873 |
ttgtaaa |
41380867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 43855153 - 43855252
Alignment:
| Q |
100 |
cagcattaacaatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaag |
199 |
Q |
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| T |
43855153 |
cagcattcacaatgtttgtgggcataaccttcccattctttggtgctctccttggattttttggaggattggcatttgctcccacaacatattttgtaag |
43855252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 43856729 - 43856685
Alignment:
| Q |
156 |
ttttttggaggatttgcttttgctccaacaacatattttgtaagc |
200 |
Q |
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| T |
43856729 |
ttttttggaggatttgtttttgctccaatgacatactttgtaagc |
43856685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 100 - 216
Target Start/End: Original strand, 8043155 - 8043271
Alignment:
| Q |
100 |
cagcattaacaatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaag |
199 |
Q |
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||||||||||||||||| | |||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
8043155 |
cagcattaacaatgttcattgccattaccttcccatttttcggtggcctcttaggattttttggaggatttgcttttgctccagcaacatattatgtaag |
8043254 |
T |
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| Q |
200 |
ccatgagaaattgtaaa |
216 |
Q |
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| T |
8043255 |
ccatgagaaattgtaaa |
8043271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 100 - 209
Target Start/End: Complemental strand, 7970554 - 7970445
Alignment:
| Q |
100 |
cagcattaacaatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaag |
199 |
Q |
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||||||||||||||||| | |||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7970554 |
cagcattaacaatgttcattgccattaccttcccatttttcggtggcctcttaggattttttggaggatttgcttttgcgccaacaacatattttgtaag |
7970455 |
T |
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| Q |
200 |
ccatgagaaa |
209 |
Q |
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|||||||||| |
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| T |
7970454 |
ccatgagaaa |
7970445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 100 - 216
Target Start/End: Original strand, 8033219 - 8033335
Alignment:
| Q |
100 |
cagcattaacaatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaag |
199 |
Q |
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||||||| ||||||||| | || ||||| ||||||||||| |||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8033219 |
cagcattcacaatgttcattgctattacattcccatttttcggtggccttctaggattttttggaggattcgcttttgctccaacaacatattttgtaag |
8033318 |
T |
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| Q |
200 |
ccatgagaaattgtaaa |
216 |
Q |
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| T |
8033319 |
ccatgaaaaattgtaaa |
8033335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 100 - 203
Target Start/End: Complemental strand, 7977326 - 7977223
Alignment:
| Q |
100 |
cagcattaacaatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaag |
199 |
Q |
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||||||| ||||||||| | || ||||| ||||||||||| | |||||| || || ||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
7977326 |
cagcattcacaatgttcattgctattacattcccatttttcgatggccttctagggttttttggagggtttgcttttgctccaacaacatactttgtaag |
7977227 |
T |
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| Q |
200 |
ccat |
203 |
Q |
| |
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|||| |
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| T |
7977226 |
ccat |
7977223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 14197346 - 14197281
Alignment:
| Q |
135 |
ttttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaagc |
200 |
Q |
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||||| ||||| || || ||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
14197346 |
tttttcggtggtctactaggattttttggtggatttgcttttgctccaacaacatactttgtaagc |
14197281 |
T |
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