View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2568_high_6 (Length: 604)
Name: NF2568_high_6
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 29949676 - 29949998
Alignment:
| Q |
1 |
aatatatttatatgagctacggttatctagaacaagggtaagtacctggggtttacaggatgttataaacgatagatcaaaatcagttaatacaatatgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29949676 |
aatatatttatatgagctacggttatctagaacaagggtaagtacctggggtttacaggatgttataaacgatagatcaaaatcagttaatacaatatgg |
29949775 |
T |
|
| Q |
101 |
ccatccttctgaagtaagagattttcaggctttaagtcacgataaattatacctagacagattcaacaacaatattcagattacatagtaaaggacaatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29949776 |
ccatccttctgaagtaagagattttcaggctttaagtcacgataaattatacctagacagattcaacaacaatattcagattacatagtaaaggacaatg |
29949875 |
T |
|
| Q |
201 |
cgattcttcaaagctaagttcaactgaattatgcaaaagaaaacatattatagtctttgtatttattgtttaggattattgtgtaggcatatcatattgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29949876 |
tgattcttcaaagctaagttcaactgaattatgcaaaagaaaacatattatagtctttgtatttattgtttaggattattgtgtaggcatatcatattgt |
29949975 |
T |
|
| Q |
301 |
atcatattatgttaatagggaat |
323 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
29949976 |
atcatattatgttaatagggaat |
29949998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 403 - 588
Target Start/End: Original strand, 29949996 - 29950181
Alignment:
| Q |
403 |
aatgagcagcttacccaaacaatggagatattccaaaccaataacaacctctgctgcatagaacctggaaacagtaaaagttaacataaactgtaagggc |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29949996 |
aatgagcagcttacccaaacaatggagatattccaaaccaataacaacctctgctgcatagaacctggaaacagtaaaagttaacataaactgtaagggc |
29950095 |
T |
|
| Q |
503 |
ctgtaatataaatttataatacaaacatctttaaagcatataattagaaccctaaatctaattctactgcattttcaatttcttat |
588 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29950096 |
ctgtaatataaatttataatacaaacatctttaaagcatataattagaaccctaaatctaattctactgcattttcaatttcttat |
29950181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 11186294 - 11186359
Alignment:
| Q |
240 |
aaaacatattatagtctttgtatttattgtttaggattattgtgtaggcatatcatattgtatcat |
305 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
11186294 |
aaaatatattatgatctttgtatttattgtttaggaatattgcaaaggcatatcatatcgtatcat |
11186359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 11194439 - 11194496
Alignment:
| Q |
240 |
aaaacatattatagtctttgtatttattgtttaggattattgtgtaggcatatcatat |
297 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
11194439 |
aaaatatattatgatctttgtatttattgtttaggaatattgcaaaggcatatcatat |
11194496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 20273476 - 20273541
Alignment:
| Q |
240 |
aaaacatattatagtctttgtatttattgtttaggattattgtgtaggcatatcatattgtatcat |
305 |
Q |
| |
|
|||| ||||||| |||||||||||||| ||||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
20273476 |
aaaatatattatgatctttgtatttattttttaggaatattgcaaaggcatatcatatcgtatcat |
20273541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University