View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2568_low_11 (Length: 441)
Name: NF2568_low_11
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_low_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 82 - 280
Target Start/End: Original strand, 15310780 - 15310984
Alignment:
| Q |
82 |
ttgaattcttcctatcctttgtggaaaaaatggtgaaagataggaagaatttcacaccgaagtgataaggaatgtagaaatatttttacttactttggga |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| |||||||||| ||||||| |||||||| |
|
|
| T |
15310780 |
ttgaattcttcctatcctttgtggaaaaaatggtgaaagaaaggaagaatttcaccctgaagtgataaggaaagtagaaatatctttacttgctttggga |
15310879 |
T |
|
| Q |
182 |
------atgtatttgtaacggaggagaagaaatagtgcgaaacnnnnnnnngaacgatcttaatttatatagacgatttaacatcaaaagccacattgtc |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15310880 |
atgtatatgtatttgtaacggaggagaagaaatagtgcgaaacaaaaaaaagaacgatcttaatttatatagacgatttaacatcaaaagccacattgtc |
15310979 |
T |
|
| Q |
276 |
caaca |
280 |
Q |
| |
|
|||| |
|
|
| T |
15310980 |
aaaca |
15310984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 82 - 280
Target Start/End: Original strand, 15316074 - 15316278
Alignment:
| Q |
82 |
ttgaattcttcctatcctttgtggaaaaaatggtgaaagataggaagaatttcacaccgaagtgataaggaatgtagaaatatttttacttactttggga |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| |||||||||| ||||||| |||||||| |
|
|
| T |
15316074 |
ttgaattcttcctatcctttgtggaaaaaatggtgaaagaaaggaagaatttcaccctgaagtgataaggaaagtagaaatatctttacttgctttggga |
15316173 |
T |
|
| Q |
182 |
------atgtatttgtaacggaggagaagaaatagtgcgaaacnnnnnnnngaacgatcttaatttatatagacgatttaacatcaaaagccacattgtc |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15316174 |
atgtatatgtatttgtaacggaggagaagaaatagtgcgaaacaaaaaaaagaacgatcttaatttatatagacgatttaacatcaaaagccacattgtc |
15316273 |
T |
|
| Q |
276 |
caaca |
280 |
Q |
| |
|
|||| |
|
|
| T |
15316274 |
aaaca |
15316278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 274 - 439
Target Start/End: Original strand, 15311031 - 15311197
Alignment:
| Q |
274 |
tccaacacaactccattaagtgaagtattgaannnnnnnnc-gaacaatcaaaaatggaatatataaccacaagaaataagcaatcccaatagcacaagc |
372 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
15311031 |
tccaacacaacaccattaagtgaagtattgaatcttttttttgaacaataaaaaatagaatatataaccacaagaaacaagcaatcccaatagcacaagc |
15311130 |
T |
|
| Q |
373 |
tctgccaaaggaataactgaatatacacaaagacagttaggccaaacaaaaaccattaagttatgcc |
439 |
Q |
| |
|
| |||||||||||| |||||||||| ||| || |||||||||||||||||||||||||||| ||||| |
|
|
| T |
15311131 |
tgtgccaaaggaattactgaatatagacagagtcagttaggccaaacaaaaaccattaagtgatgcc |
15311197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 274 - 439
Target Start/End: Original strand, 15316325 - 15316491
Alignment:
| Q |
274 |
tccaacacaactccattaagtgaagtattgaannnnnnnnc-gaacaatcaaaaatggaatatataaccacaagaaataagcaatcccaatagcacaagc |
372 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
15316325 |
tccaacacaacaccattaagtgaagtattgaatcttttttttgaacaataaaaaatagaatatataaccacaagaaacaagcaatcccaatagcacaagc |
15316424 |
T |
|
| Q |
373 |
tctgccaaaggaataactgaatatacacaaagacagttaggccaaacaaaaaccattaagttatgcc |
439 |
Q |
| |
|
| |||||||||||| |||||||||| ||| || |||||||||||||||||||||||||||| ||||| |
|
|
| T |
15316425 |
tgtgccaaaggaattactgaatatagacagagtcagttaggccaaacaaaaaccattaagtgatgcc |
15316491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 15310321 - 15310368
Alignment:
| Q |
20 |
aatatggaacacaa-ggtaaatggaaaagaatacatcataaagtagaa |
66 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
15310321 |
aatatggaacacaaaggtaaatggaaaagaatatatcataaagtagaa |
15310368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 15315615 - 15315662
Alignment:
| Q |
20 |
aatatggaacacaa-ggtaaatggaaaagaatacatcataaagtagaa |
66 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
15315615 |
aatatggaacacaaaggtaaatggaaaagaatatatcataaagtagaa |
15315662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University