View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2568_low_14 (Length: 429)
Name: NF2568_low_14
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 247 - 428
Target Start/End: Complemental strand, 35867333 - 35867156
Alignment:
| Q |
247 |
atgtacccattatatagaaaaatgtccattcaatatattttgttttttaaaatagtttttacaaatggggcaaatcagcaagaaaaatttgcagacttta |
346 |
Q |
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| T |
35867333 |
atgtacccattatata----aatgtccgttcaaaatattatgttttttaaaatagtttttgcaaatggggcaaatcagcaagaaaaatttgcagactata |
35867238 |
T |
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| Q |
347 |
tatatttgtagggatgtaaagcatattttagccataaatatcttgaatactctaaacttgatttaattatcttgtctttctt |
428 |
Q |
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| T |
35867237 |
tatatttgtagggatgtaaagcatattttagccataaatatctttaatactctaaacttgatttaattctcttgtctttctt |
35867156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 35867588 - 35867448
Alignment:
| Q |
19 |
gctgcaagatccttgttatggccaattatgtgagaagatataaaatcaggatatggagaacgtacaaaaagaatgacagtgtcctaagtcccacatcgat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35867588 |
gctgcaagatccttgttatggccaattatgtgagaagatacaaaatcaggatatggagaacgtacaaaaagaatgacagtgtcctaagtcccacatcgat |
35867489 |
T |
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| Q |
119 |
aaatatggtaaaagtactgaaatgctttgcttataaatatg |
159 |
Q |
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| T |
35867488 |
aaatatggtaaaagtactgaaatgctttgcttataaatatg |
35867448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 35877797 - 35877659
Alignment:
| Q |
19 |
gctgcaagatccttgttatggccaattatgtgagaagatataaaatcaggatatggagaacgtacaaaaagaatgacagtgtcctaagtcccacatcgat |
118 |
Q |
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| T |
35877797 |
gctgcaagatccttattatggccaattatgggacaagatacaaaatcaggatatggagaacgta--aaaagaatgacagtgtcttaagtcccacatcgat |
35877700 |
T |
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| Q |
119 |
aaatatggtaaaagtactgaaatgctttgcttataaatatg |
159 |
Q |
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| T |
35877699 |
aaatatggtaagagtactaaaatgctttgcttataaatatg |
35877659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 35867433 - 35867382
Alignment:
| Q |
195 |
tcaaaaactcttgcacgtcatgtctaccgcatttattatatatggtacaggcatg |
249 |
Q |
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|||||||||||||||||||||||||||| ||| |||| ||||||||||||||| |
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| T |
35867433 |
tcaaaaactcttgcacgtcatgtctaccacat---ttatctatggtacaggcatg |
35867382 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 24451998 - 24451860
Alignment:
| Q |
19 |
gctgcaagatccttgttatggccaattatgtgagaagatataaaatcaggatatggagaacgtacaaaaagaatgacagtgtcctaagtcccacatcgat |
118 |
Q |
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|||||||||||||| ||||||||||||||| || |||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
24451998 |
gctgcaagatccttattatggccaattatgggacaagatacaaaatcaggatatggagaacgta--aaaagaatgacagtgtcttaagtcccacatcgat |
24451901 |
T |
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| Q |
119 |
aaatatggtaaaagtactgaaatgctttgcttataaatatg |
159 |
Q |
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||||||||||| |||||| |||||||||||||||||||||| |
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| T |
24451900 |
aaatatggtaagagtactaaaatgctttgcttataaatatg |
24451860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 331
Target Start/End: Original strand, 53632694 - 53632744
Alignment:
| Q |
281 |
atattttgttttttaaaatagtttttacaaatggggcaaatcagcaagaaa |
331 |
Q |
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|||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
53632694 |
atattttgttttttaaaatagtacatacaaatgggacaaatcagcaagaaa |
53632744 |
T |
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