View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2568_low_15 (Length: 429)
Name: NF2568_low_15
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 125 - 411
Target Start/End: Complemental strand, 4865344 - 4865054
Alignment:
| Q |
125 |
gctttcttaataaaaattacatactccaatgatgtatgggaaattttacccctctttcatttacatgaccagctctttcacttaatgagagtgagagttt |
224 |
Q |
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| T |
4865344 |
gctttcttaataaaaattacatactccaatgatgtatgggaaattttacctctatttcatttacaggaccagctctttcacttaatgagagtgagagttt |
4865245 |
T |
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| Q |
225 |
aaaatatgaaaatggtgatgtagtcgccactgnnnnnnnn----aatgtgactactttaaaatgcagccataattattttaatgtggattttgtaacaaa |
320 |
Q |
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| T |
4865244 |
aaaatatgataatggtgatgtagtcgccactgttttttttttttaatgtgactactttaaaatgcagccataattattttaatgtggtttttgtaacaaa |
4865145 |
T |
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| Q |
321 |
gagatcttttgaccatttcaaagttgtcaatttcacagaaatttcccttcctacctctcaatgtttataagaataaataaatgtaacttct |
411 |
Q |
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| T |
4865144 |
gagatcttttgaccatttcaaagttgtcaatttcacagaaatttcccttcctacctttcaatgtttataagaataaataaatgtaacttct |
4865054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 4865431 - 4865344
Alignment:
| Q |
12 |
atgaaaatgaaatctttcctaattaagagataacttgc--------ctaactgtctttagtgatgttatgtgccctctttctcatctg |
91 |
Q |
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| T |
4865431 |
atgaaaatgaaatctttcctaattaagagataacttgcgctccaagctaactgtctttagtgatgttatgtgccctctttctcatctg |
4865344 |
T |
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