View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2568_low_17 (Length: 422)
Name: NF2568_low_17
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 77 - 416
Target Start/End: Complemental strand, 13644482 - 13644144
Alignment:
| Q |
77 |
ctaggttggagcaagaatatggtctcttgttcaatttgaagtattttgaagagaagatccttgctggggatttggatgagtgtgagaaatatgtcaatgg |
176 |
Q |
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| T |
13644482 |
ctaggttggagcaagaatatggtctcttgttcaatttgaagtattttgaagagaagatccttgctggggatttggatgagtgtgagaaatatgtcaatgg |
13644383 |
T |
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| Q |
177 |
gtctaatatnnnnnnnnnntaataatcgacattcgattgatatgttctttgagattaggaagcagaagtattttgaagccttggacaggtagttcgcttc |
276 |
Q |
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| T |
13644382 |
gtctactataaaaaaataataataatcgacattcgattgatatgttctttgagattaggaagcagaagtattttgaagccttggacaggtagttctcttc |
13644283 |
T |
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| Q |
277 |
atctttatcatcatcatcctgaaatcattatatatcattaacgttttaaactatagtcacaataaggatagtgnnnnnnnnnnnnngttgaacaagcata |
376 |
Q |
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| T |
13644282 |
atctttatcatcatcatcctgaaatcattatatatcattaacgttttaaactatagtcacaataaggatagtg-ttttttttttttgttgaacaagcata |
13644184 |
T |
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| Q |
377 |
attaaggatagtgttctcatgcctcgatctttgatatttt |
416 |
Q |
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| T |
13644183 |
attaaggatagtgttctcatgcctcgatctttgatatttt |
13644144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 78 - 164
Target Start/End: Complemental strand, 13689978 - 13689892
Alignment:
| Q |
78 |
taggttggagcaagaatatggtctcttgttcaatttgaagtattttgaagagaagatccttgctggggatttggatgagtgtgagaa |
164 |
Q |
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| T |
13689978 |
tagggtggagcaagaatctggtctcttcttcaatttgaagtattttgaagagaaaatccttgctggagattgggatgagtgtgagaa |
13689892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 13641689 - 13641627
Alignment:
| Q |
77 |
ctaggttggagcaagaatatggtctcttgttcaatttgaagtattttgaagagaagatccttg |
139 |
Q |
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| T |
13641689 |
ctaggttggagcaagaatctagtctcttgttaaatttgaaatattttgaagagaagatccttg |
13641627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 13634894 - 13634843
Alignment:
| Q |
218 |
atgttctttgagattaggaagcagaagtattttgaagccttggacaggtagt |
269 |
Q |
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| T |
13634894 |
atgttctttgagattaggaagcaaaagtatcttgaagccttggacaggtagt |
13634843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 13644558 - 13644517
Alignment:
| Q |
1 |
tggtgagtaattaacaagaatggtaaattaatattggaaaaa |
42 |
Q |
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| T |
13644558 |
tggtgagtaattaacaagaatggtaaattaatattggaaaaa |
13644517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 27532185 - 27532236
Alignment:
| Q |
218 |
atgttctttgagattaggaagcagaagtattttgaagccttggacaggtagt |
269 |
Q |
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| T |
27532185 |
atgttttttcagattaggaagcagaagtatttggaagccttggacaggtagt |
27532236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 13641772 - 13641731
Alignment:
| Q |
1 |
tggtgagtaattaacaagaatggtaaattaatattggaaaaa |
42 |
Q |
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| T |
13641772 |
tggtgaataattaccaagaatggtaaattaatattggaaaaa |
13641731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 49954677 - 49954729
Alignment:
| Q |
79 |
aggttggagcaagaatatggtctcttgttcaatttgaagtattttgaagagaa |
131 |
Q |
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|||||||||||||||| |||| | |||||||| ||||||||||||||||||| |
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| T |
49954677 |
aggttggagcaagaatctggttttctgttcaatatgaagtattttgaagagaa |
49954729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 47414873 - 47414833
Alignment:
| Q |
221 |
ttctttgagattaggaagcagaagtattttgaagccttgga |
261 |
Q |
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| T |
47414873 |
ttcttcgagattaggaagcagaagtatcttgaagcgttgga |
47414833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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