View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2568_low_2 (Length: 876)
Name: NF2568_low_2
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-163; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 52 - 372
Target Start/End: Complemental strand, 540893 - 540571
Alignment:
| Q |
52 |
aaacaattttgaaacattggatactagggaattgtcctgtccctgtccttgccaatttatttaacgtttgcattgctgtctgtctgcatatatacaattg |
151 |
Q |
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| T |
540893 |
aaacaatttttaaacattggataccagggaattgtcctgtccctgtccttgccaatttatttaacgtttgcattgctgtctgtctgcatatatacaattg |
540794 |
T |
|
| Q |
152 |
tgcctcagagacttgtttctttcctctattagtaacctcttctctctct--atttcaaaagtgaatagtgccattcttcgatggaaatcatagagggagt |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
540793 |
tgcctcagagacttgtttctttcctctattagtaacctcttctctctctctatttcaaaagtgaatagtgccattcttcaatggaaatcatagtgggagt |
540694 |
T |
|
| Q |
250 |
agtgcacgtgataaacacaattaatatttatatagtatttcaaattgttttatcacatgatcataatgagtaaaacaaaaaattgatcatagctaccaaa |
349 |
Q |
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| T |
540693 |
agtgcacgtgataaacacaattaatatttatatagtatttcaaattgttttatcacatgatcataatgagtaaaacaaaaaattaatcatagctaccaaa |
540594 |
T |
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| Q |
350 |
ttgtcggacaatggaaaccccca |
372 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
540593 |
ttgtcggacaatggaaaccccca |
540571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 484 - 685
Target Start/End: Complemental strand, 540466 - 540265
Alignment:
| Q |
484 |
aaggtccagctgtggtccttctaatatgacctgttatagccactagtagatgcagttccatgttcttctccctccttcgtctcttccttccaccaccaca |
583 |
Q |
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| T |
540466 |
aaggtccagctgtggtccttctaatatgacctgttatagctagtagtagatgcagttccatgttcttctctctccttcgtctcttccttccaccaccaca |
540367 |
T |
|
| Q |
584 |
ccaagtccttttcttaatcggatcagaccaagttctttaacttcttaaaaaacacatgattaagattctactgtgtgaggtgcttaaggttttggggtta |
683 |
Q |
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| T |
540366 |
ccaagtccttttcttaaacggatcagatcaagttctttaacttcttaaaaaacacatgactaagattctagtgtgtgaggtgcttaaggttttggggtta |
540267 |
T |
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| Q |
684 |
ga |
685 |
Q |
| |
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|| |
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| T |
540266 |
ga |
540265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 755 - 859
Target Start/End: Complemental strand, 540266 - 540162
Alignment:
| Q |
755 |
gagcaaaaaattctgcaaaatctaactgtcttcaattccactttgttggggttgcaagttaagacgagatgatgagggggagagtggtggggttcacata |
854 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
540266 |
gagcaaaaaattctgcaaaatctatctgtcttcaattccactttgttggggttgcaagttaagaggagatgatgagggggagagtggtggggttcacata |
540167 |
T |
|
| Q |
855 |
tgtta |
859 |
Q |
| |
|
||||| |
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| T |
540166 |
tgtta |
540162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 542962 - 542919
Alignment:
| Q |
11 |
ctgtagagtaactacttggctcaccagaaattaaacaaccaaaa |
54 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
542962 |
ctgtagagtaattacttggctcaccagaaattaaacaaccaaaa |
542919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 257; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 484 - 859
Target Start/End: Complemental strand, 30562390 - 30562027
Alignment:
| Q |
484 |
aaggtccagctgtggtccttctaatatgacctgttatagccactagtagatgcagttccatgttcttctccctccttcgtctcttccttccaccaccaca |
583 |
Q |
| |
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|||||||| |||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| || |||||||||||||||||||| ||||| |
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| T |
30562390 |
aaggtccaactgtggtccttctaatatgacctgatatagcccgtggtagatgcagttccatgttcttctctctgcttcgtctcttccttccaccgccaca |
30562291 |
T |
|
| Q |
584 |
ccaagtccttttcttaatcggatcagaccaagttctttaacttcttaaaaaacacatgattaagattctactgtgtgaggtgctt-aaggttttggggtt |
682 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
30562290 |
ccaagtccttttcttaaacggatcagaccaagttctttaacttcttaaaaaacacatgactaagattctactgtgtgaggtgcttaaaggttttggggtt |
30562191 |
T |
|
| Q |
683 |
agacaaagtttttaatttttacgatatatgtcttggttctcataataaaaatgaagttaccgaaaatttaaggagcaaaaaattctgcaaaatctaactg |
782 |
Q |
| |
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||||| ||||||||||||||||||| |||||||||| ||||||||| | ||||||||||||| ||||||||||||||||||||||||| |
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| T |
30562190 |
agacagagtttttaatttttacgatttatgtcttgg-------------aatgaagttgcagaaaatttaaggaccaaaaaattctgcaaaatctaactg |
30562104 |
T |
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| Q |
783 |
tcttcaattccactttgttggggttgcaagttaagacgagatgatgagggggagagtggtggggttcacatatgtta |
859 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30562103 |
tcctcaattccactttgttggggttgcaagttaagaggagatgatgagggggagagtggtggggttcacatatgtta |
30562027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 484 - 859
Target Start/End: Complemental strand, 54902183 - 54901820
Alignment:
| Q |
484 |
aaggtccagctgtggtccttctaatatgacctgttatagccactagtagatgcagttccatgttcttctccctccttcgtctcttccttccaccaccaca |
583 |
Q |
| |
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|||||||| |||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| || |||||||||||||||||||| ||||| |
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| T |
54902183 |
aaggtccaactgtggtccttctaatatgacctgatatagcccgtggtagatgcagttccatgttcttctctctgcttcgtctcttccttccaccgccaca |
54902084 |
T |
|
| Q |
584 |
ccaagtccttttcttaatcggatcagaccaagttctttaacttcttaaaaaacacatgattaagattctactgtgtgaggtgctt-aaggttttggggtt |
682 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
54902083 |
ccaagtccttttcttaaacggatcagaccaagttctttaacttcttaaaaaacacatgactaagattctactgtgtgaggtgcttaaaggttttggggtt |
54901984 |
T |
|
| Q |
683 |
agacaaagtttttaatttttacgatatatgtcttggttctcataataaaaatgaagttaccgaaaatttaaggagcaaaaaattctgcaaaatctaactg |
782 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||| ||||||||| | ||||||||||||| ||||||||||||||||||||||||| |
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| T |
54901983 |
agacagagtttttaatttttacgatttatgtcttgg-------------aatgaagttgcagaaaatttaaggaccaaaaaattctgcaaaatctaactg |
54901897 |
T |
|
| Q |
783 |
tcttcaattccactttgttggggttgcaagttaagacgagatgatgagggggagagtggtggggttcacatatgtta |
859 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||| |
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| T |
54901896 |
tcctcaattccactttgttggggttgcaagttaagaggatatgacgagggggagagtggtggggttcacatatgtta |
54901820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 245; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 496 - 859
Target Start/End: Complemental strand, 9333540 - 9333189
Alignment:
| Q |
496 |
tggtccttctaatatgacctgttatagccactagtagatgcagttccatgttcttctccctccttcgtctcttccttccaccaccacaccaagtcctttt |
595 |
Q |
| |
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||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| |
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| T |
9333540 |
tggtccttctaatatgacctgatatagcccgtggtagatgcagttccatgttcttctctctgcttcgtctcttccttccaccgccacaccaagtcctttt |
9333441 |
T |
|
| Q |
596 |
cttaatcggatcagaccaagttctttaacttcttaaaaaacacatgattaagattctactgtgtgaggtgctt-aaggttttggggttagacaaagtttt |
694 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
9333440 |
cttaaacggatcagaccaagttctttaacttcttaaaaaacacatgactaagattctactgtgtgaggtgcttaaaggttttggggttagacagagtttt |
9333341 |
T |
|
| Q |
695 |
taatttttacgatatatgtcttggttctcataataaaaatgaagttaccgaaaatttaaggagcaaaaaattctgcaaaatctaactgtcttcaattcca |
794 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||| | ||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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|
| T |
9333340 |
taatttttacgatttatgtcttgg-------------aatgaagttgcagaaaatttaaggaccaaaaaattctgcaaaatctaactgtcctcaattcca |
9333254 |
T |
|
| Q |
795 |
ctttgttggggttgcaagttaagacgagatgatgagggggagagtggtggggttcacatatgtta |
859 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
9333253 |
ctttgttggggttgcaagttaagaggagatgacgagggggagagtggtggggttcacatatgtta |
9333189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 4e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 783 - 855
Target Start/End: Complemental strand, 28823941 - 28823869
Alignment:
| Q |
783 |
tcttcaattccactttgttggggttgcaagttaagacgagatgatgagggggagagtggtggggttcacatat |
855 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
28823941 |
tcttcaattccactttgttggggttgcaagttaagaggagatgacgagggggagagtggtggggttcacatat |
28823869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 484 - 569
Target Start/End: Complemental strand, 28824022 - 28823937
Alignment:
| Q |
484 |
aaggtccagctgtggtccttctaatatgacctgttatagccactagtagatgcagttccatgttcttctccctccttcgtctcttc |
569 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| || |||||||||||| |
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| T |
28824022 |
aaggtccaactgtggtccttctaatatgacctgttatagcccgtggtagatgcagttccatgttcttctctctgcttcgtctcttc |
28823937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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