View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2568_low_22 (Length: 390)
Name: NF2568_low_22
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 26886390 - 26886014
Alignment:
| Q |
1 |
aaactattattcttaattaagtacttaatctatgtcacagacaaataatccattgttgcatgcagagccggatccggaacttatgcatcgcataaaaaac |
100 |
Q |
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| T |
26886390 |
aaactattattcttaattaagtacttaatctatgtcacagacaaataatccattgttgcatgcagagccggatccggaacttatgcatcgcataaaaaac |
26886291 |
T |
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| Q |
101 |
ttatctaagcgaccaaagttcaattctaaagatgataatgtctttctggatatacagacaaagaaagctgctcttaaggtttcttcttctgttgttgctc |
200 |
Q |
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| T |
26886290 |
ttatctaagcgaccaaagttcaattctaaagatgataatgtctttctggatttacagacaaagaaagctgctcttaaggtttcttcttctgttgttgctc |
26886191 |
T |
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| Q |
201 |
ttttatcttatactactggtattgtattctattcaactctcaaattccctttctctctttcttttaatgatcttgctacattacaataatcattgttttt |
300 |
Q |
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| T |
26886190 |
ttttatcttatactactggtattgtattctattcaactctccaattccttttctctctttcttttaatgatcttgctacattacaataatcattgctttt |
26886091 |
T |
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| Q |
301 |
tcttcctttataggggaccaagaattgaatcaatgttccggtgtgatcgttgaaaatgatgccgataatgctcatatt |
378 |
Q |
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| T |
26886090 |
t-ttcctttataggggaccaagaattgaatcaatgttccggtgtgatcgttgaaaatgatgccaataatgctcatatt |
26886014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 135 - 266
Target Start/End: Original strand, 26631080 - 26631216
Alignment:
| Q |
135 |
ataatgtctttctggatatacagacaaagaaagctgctcttaaggtttcttcttctgttgttgctcttttatcttatactactgg-----tattgtattc |
229 |
Q |
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| T |
26631080 |
ataatgcctatctggatgtaaatacaaagaaagctgctctcaaggcttcttcttctgttgttgctcttttatcttatactactggtattttattctattc |
26631179 |
T |
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| Q |
230 |
tattcaactctcaaattccctttctctctttctttta |
266 |
Q |
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| T |
26631180 |
tattcaactttccaattccctttctctctttctttta |
26631216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 312 - 378
Target Start/End: Original strand, 26631252 - 26631318
Alignment:
| Q |
312 |
aggggaccaagaattgaatcaatgttccggtgtgatcgttgaaaatgatgccgataatgctcatatt |
378 |
Q |
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| T |
26631252 |
aggggaccaagagtttaatcaatgttctggtgttatcattgaaaatgatgccaataatgctcatatt |
26631318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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