View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2568_low_23 (Length: 368)
Name: NF2568_low_23
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 33 - 348
Target Start/End: Original strand, 31761005 - 31761325
Alignment:
| Q |
33 |
agcagaacctgtgagaatttagagaataatatcattaaatatatagaaaagcgcttccgtgatacaaaaatgcagcataagaagagcatagtattttaga |
132 |
Q |
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| T |
31761005 |
agcataacctgtgagaatttagagaataatatcattaaatatataggaaagcgcttccgtgatacagagatgcagcataagaagagcatagtattttaga |
31761104 |
T |
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| Q |
133 |
tcaaaccttcaacaccagcagtaaacagaaccaggtcagcaaattcactaagttgctttaagaattctttcagcccggggcgttcaaagacggtaacata |
232 |
Q |
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| T |
31761105 |
tcaaaccttcaacaccagcagtaaacagaaccaggtcagcaaattcgctaagttgctttaagaattctttcagcccggggcgttcaaagacggtaacata |
31761204 |
T |
|
| Q |
233 |
attgattattggttctccatctgcttccttgaagacacaacattcacatgttaagatttaatactttatcagaagacaagga-----atacaagcgatca |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31761205 |
attgattattggttctccatctgcttccttgaagacacaacattcacatgttaagatttaatactttatcagaagacaaggaatcagatacaagcgatca |
31761304 |
T |
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| Q |
328 |
agtaacaaaccttgttatcga |
348 |
Q |
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| T |
31761305 |
agtaacaaaccttgttatcga |
31761325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 135 - 265
Target Start/End: Original strand, 35574370 - 35574500
Alignment:
| Q |
135 |
aaaccttcaacaccagcagtaaacagaaccaggtcagcaaattcactaagttgctttaagaattctttcagcccggggcgttcaaagacggtaacataat |
234 |
Q |
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|||||||||| ||| ||||||||||| ||||||||||||||||||||||||| | |||||||||| |||| ||| || ||||||||||| |||||||||| |
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| T |
35574370 |
aaaccttcaagacccgcagtaaacagcaccaggtcagcaaattcactaagtttcgttaagaattccttcaacccaggccgttcaaagactgtaacataat |
35574469 |
T |
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| Q |
235 |
tgattattggttctccatctgcttccttgaa |
265 |
Q |
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| ||| ||||| ||| ||| |||||||||| |
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| T |
35574470 |
taatttttggtcttccttctccttccttgaa |
35574500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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