View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2568_low_27 (Length: 345)
Name: NF2568_low_27
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_low_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 149 - 332
Target Start/End: Original strand, 54902762 - 54902945
Alignment:
| Q |
149 |
atttagagagacgcaaccagtgacagtgagtgagaaagtagtttatacataaagatgataaagaagaatgcgaaatttgacagctagcacatactatttc |
248 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54902762 |
atttagagagaggaaaccagtgacagtgagtgagaaagtagtttatacataaagatgataaagaagaatgcgaaatttgacagctagcacatactatttc |
54902861 |
T |
|
| Q |
249 |
tactaaagaaataggtcaaaatctcttcaaaagtagtcttgggatgcaagaaacaaaatttgaacatatataaatctaaactat |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54902862 |
tactaaagaaataggtcaaaatctcttcaaaagtagtcttgggatgcaagaaacaaaatttgaacatatataaatctaaactat |
54902945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 54901062 - 54901217
Alignment:
| Q |
1 |
gaccgtaagcacatgtctttggatccgtatcatagaagccaaacaaataaagaaatatttagagagaggcaatcagnnnnnnnnnnnnngaatggcaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
54901062 |
gaccgtaagcacatgtctttggatccgtatcatagaagccaaacaaataaagaaatatttagagagaggcaaccagttttttcttttttgaatggcaaag |
54901161 |
T |
|
| Q |
101 |
tatgaatataaataaataaaggaggaaacaagtcccaaatagataaatatttagag |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54901162 |
tatgaatataaataaataaaggaggaaacaagtcccaaatagataaatatttagag |
54901217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University