View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2568_low_28 (Length: 344)
Name: NF2568_low_28
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 122 - 326
Target Start/End: Complemental strand, 14020708 - 14020500
Alignment:
| Q |
122 |
tgttccagctagttctccatcatccgtgtcctaaaagaacacttagttcatttctcatatcaccgaccacaccatcagaacggcctctttgagatcagtc |
221 |
Q |
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| T |
14020708 |
tgttccagctagttctccatcatccgtaacctaaaagaacacttagttcatttctcatatcaccgaccacacgatcagaacggcctctttgagatcaatc |
14020609 |
T |
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| Q |
222 |
agagctcaaaaaatgtatttgtctaacggaatttcagcacatgaccggtgg----aattgaaatgtatttatgttcacatttcaaccccaaagaacactt |
317 |
Q |
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| T |
14020608 |
agagctcaaaaaatgtatttgtctaacggaatttcagcacatgaccggtggaattaattaaaatgtatttatgttcacatttcaaccccaaagaacactt |
14020509 |
T |
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| Q |
318 |
gtctaaggg |
326 |
Q |
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||||||||| |
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| T |
14020508 |
gtctaaggg |
14020500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 232 - 302
Target Start/End: Complemental strand, 14044853 - 14044783
Alignment:
| Q |
232 |
aaatgtatttgtctaacggaatttcagcacatgaccggtggaattgaaatgtatttatgttcacatttcaa |
302 |
Q |
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| T |
14044853 |
aaatgtatttgtctaacgaaatttcagcacatgactgctggaattaaaatgtatttatgttcacatttcaa |
14044783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 148
Target Start/End: Complemental strand, 14044896 - 14044861
Alignment:
| Q |
113 |
attcagttatgttccagctagttctccatcatccgt |
148 |
Q |
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| T |
14044896 |
attcagttatgttccagctagttctccatcatccgt |
14044861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 258
Target Start/End: Original strand, 13475564 - 13475594
Alignment:
| Q |
228 |
caaaaaatgtatttgtctaacggaatttcag |
258 |
Q |
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| T |
13475564 |
caaaaaatgtatttgtctaacggaatttcag |
13475594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 14013156 - 14013119
Alignment:
| Q |
239 |
tttgtctaacggaatttcagcacatgaccggtggaatt |
276 |
Q |
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| T |
14013156 |
tttgtctaactgaatttcagcacatgacaggtggaatt |
14013119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 14044959 - 14044927
Alignment:
| Q |
76 |
acatttaatgtcatatatgttctgattttcttt |
108 |
Q |
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| T |
14044959 |
acattaaatgtcatatatgttctgattttcttt |
14044927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 276
Target Start/End: Original strand, 10507706 - 10507808
Alignment:
| Q |
174 |
tctcatatcaccgaccacaccatcagaacggcctctttgagatcagtcagagctcaaaaaatgtatttgtctaacggaatttcagcacatgaccggtgga |
273 |
Q |
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||||||||||| ||| ||||||| ||||||| ||| | ||||||||| ||| | ||||||||||||||||||| | ||||||||||||||||| |||||| |
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| T |
10507706 |
tctcatatcactgactacaccattagaacggtctcctcgagatcagttagaacccaaaaaatgtatttgtctatctgaatttcagcacatgacaggtgga |
10507805 |
T |
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| Q |
274 |
att |
276 |
Q |
| |
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||| |
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|
| T |
10507806 |
att |
10507808 |
T |
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