View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2568_low_29 (Length: 342)
Name: NF2568_low_29
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 11193139 - 11193460
Alignment:
| Q |
1 |
ctatgaaaacaacagaaaagatgaaaagagtaataaaatgatggaaaacactacttacccattttactgttattctctctttgagttcgaattttggttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11193139 |
ctatgaaaacaacagaaaagatgaaaagagtaataaaatgatggaaaacactacttacccattttactgttattctctctttgagttcgaattttggttc |
11193238 |
T |
|
| Q |
101 |
aatgggccgtcttcccgtgacaagttcaacaagcaaaacaccaaacgaataaacgtcactcttttcggttagttgataagttttcaagtattccggatcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11193239 |
aatgggccgtcttcccgtgacaagttcaacaagcaaaacaccgaacgaataaacgtcactcttttcggttagttgataagttttcaagtattccggatcc |
11193338 |
T |
|
| Q |
201 |
aagtagccagctgttcccttaacttgggtagagacatgtgtcatgccagagtcactgtcaggtgcctgtctagcaaaaccaaagtctgcaaccttagctc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11193339 |
aagtagccagctgttcccttaacttgggtagagacatgtgtcatgccagagtcactgtcaggtgcctgtctagcaaaaccaaagtctgcaaccttagctc |
11193438 |
T |
|
| Q |
301 |
gaaaatgctcggtgaggagaat |
322 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
11193439 |
gaaaatgctcggtgaggagaat |
11193460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 29511411 - 29511512
Alignment:
| Q |
125 |
ttcaacaagcaaaacaccaaacgaataaacgtcactcttttcggttagttgataagttttcaagtattccggatccaagtagccagctgttcccttaact |
224 |
Q |
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|||||||||||| |||||||| |||||||| ||||||||||| || |||||||||||| ||||||| || ||||||| || ||||||||||| |||||| |
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| T |
29511411 |
ttcaacaagcaatacaccaaatgaataaacatcactcttttctgtgagttgataagttctcaagtactcaggatccatatatccagctgttcctttaact |
29511510 |
T |
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| Q |
225 |
tg |
226 |
Q |
| |
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|| |
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| T |
29511511 |
tg |
29511512 |
T |
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