View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2568_low_34 (Length: 323)
Name: NF2568_low_34
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_low_34 |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 25229386 - 25229686
Alignment:
| Q |
11 |
cagagaaaagcacaaaaggacaaaataatagctataaagggtagcgtcattcaaatgagaacacgcctctaaacaacacaaactctcaacaaaatatttt |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
25229386 |
cagagaaaagcacaaaaggacaaaataatagctataaagggtagcatcattcaaatgagaacacgcctctaaacaacacaaattctcaaaaaaatatttt |
25229485 |
T |
|
| Q |
111 |
atgat----ttcagaatcacttgatctaaaaaagatcagaagctgaaaattacagattgcttgaaagagatcatatacatctttcaacttgagattcaat |
206 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25229486 |
atgatatatttcagaatcacttgatctaaaaaagatcagaagctgaaaattacagattgcttgaaagagatcatatacatctttcaacttgagattcaat |
25229585 |
T |
|
| Q |
207 |
tctcaaacatcggataccaatcacaaatacactcaagcatccaatatataaatggcgcatcttttatagtgtatttgaatggtttagattcatcttagtg |
306 |
Q |
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||||| |||| |||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
25229586 |
tctcatacattggataccaatcacaaatagactcaagcatccaatatataattggtgcatcttttatagtgtatttgaatagtttagattcaccttagtg |
25229685 |
T |
|
| Q |
307 |
t |
307 |
Q |
| |
|
| |
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| T |
25229686 |
t |
25229686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 285
Target Start/End: Complemental strand, 7170215 - 7170135
Alignment:
| Q |
205 |
attctcaaacatcggataccaatcacaaatacactcaagcatccaatatataaatggcgcatcttttatagtgtatttgaa |
285 |
Q |
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|||||||||||| ||| ||| ||||||||||||||||| |||| ||||| ||| |||||| ||||||||||||||| |
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| T |
7170215 |
attctcaaacattagattgcaagcacaaatacactcaagcctccattatatctctggaacatcttctatagtgtatttgaa |
7170135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 98 - 298
Target Start/End: Original strand, 17747787 - 17747987
Alignment:
| Q |
98 |
aacaaaatattttatgatttcagaatcacttgatctaaaaaagatcagaagctgaaaattacagattgcttgaaagagatcatatacatctttcaacttg |
197 |
Q |
| |
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|||||||| ||||||||||||| | |||||| ||| |||| | ||||||||| ||||| |||| |||||||||||| |||||||| |||| |||||||| |
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| T |
17747787 |
aacaaaatcttttatgatttcaaattcacttaatcaaaaagatatcagaagcagaaaagtacaaattgcttgaaagtgatcatattcatccttcaacttc |
17747886 |
T |
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| Q |
198 |
agattcaattctcaaacatcggataccaatcacaaatacactcaagcatccaatatataaatggcgcatcttttatagtgtatttgaatggtttagattc |
297 |
Q |
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||||||||||||||||||| |||| ||| |||||||||||| ||| ||||||||||| || | ||||||||||||||||||||| |||||||||| |
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| T |
17747887 |
agattcaattctcaaacattagatagaaattacaaatacactcgagcctccaatatatatttgacatatcttttatagtgtatttgaaaagtttagattc |
17747986 |
T |
|
| Q |
298 |
a |
298 |
Q |
| |
|
| |
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|
| T |
17747987 |
a |
17747987 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 57 - 249
Target Start/End: Original strand, 5486352 - 5486543
Alignment:
| Q |
57 |
tcattcaaatgagaacacgcctctaaacaacacaaactctcaacaaaatattttatgatttcagaatcacttgatctaaaaaagatcagaagctgaaaat |
156 |
Q |
| |
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|||||||||||||||||| ||||| |||||| | ||||||| |||||| ||||||| || |||||||| |||| ||||||||||||||| ||||| |
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| T |
5486352 |
tcattcaaatgagaacacacctctccacaacagagactctcatcaaaatcttttatgtcagcataatcactttatctgaaaaagatcagaagcagaaaaa |
5486451 |
T |
|
| Q |
157 |
tacagattgcttgaaagagatcatatacatctttcaacttgagattcaattctcaaacatcggataccaatcacaaatacactcaagcatcca |
249 |
Q |
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|| | ||||||||||||| |||||| ||||||| |||||||||||| |||||||||||| |||| || ||||||||||||||||| |||| |
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| T |
5486452 |
taaaaattgcttgaaagaaatcataatcatcttttaacttgagattc-attctcaaacattagatagtaaacacaaatacactcaagcttcca |
5486543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 165 - 277
Target Start/End: Complemental strand, 11728758 - 11728646
Alignment:
| Q |
165 |
gcttgaaagagatcatatacatctttcaacttgagattcaattctcaaacatcggataccaatcacaaatacactcaagcatccaatatataaatggcgc |
264 |
Q |
| |
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|||||||||||||||||| ||||| |||| ||| ||| | ||||||||||| |||| |||||| | ||||||||| | |||||||||| |||| | |
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| T |
11728758 |
gcttgaaagagatcatattcatctcgcaacatgatattaacttctcaaacattagatagaaatcaccattacactcaatcttccaatatatctttggcac |
11728659 |
T |
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| Q |
265 |
atcttttatagtg |
277 |
Q |
| |
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||||||||||||| |
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| T |
11728658 |
atcttttatagtg |
11728646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 137 - 255
Target Start/End: Complemental strand, 168996 - 168878
Alignment:
| Q |
137 |
aaagatcagaagctgaaaattacagattgcttgaaagagatcatatacatctttcaacttgagattcaattctcaaacatcggataccaatcacaaatac |
236 |
Q |
| |
|
|||||||||||| ||||| | |||||| ||||||||||||||||| ||||| |||||| ||||||| ||||||||||| |||| |||||||||||| |
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| T |
168996 |
aaagatcagaagtagaaaagttcagatttcttgaaagagatcatattcatctcacaacttaagattcacttctcaaacattagatagaaatcacaaatac |
168897 |
T |
|
| Q |
237 |
actcaagcatccaatatat |
255 |
Q |
| |
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|||||| | |||| ||||| |
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| T |
168896 |
actcaaacctccattatat |
168878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 20590249 - 20590297
Alignment:
| Q |
192 |
aacttgagattcaattctcaaacatcggataccaatcacaaatacactca |
241 |
Q |
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||||||||||||| ||||||||||| |||| |||||||||||||||||| |
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| T |
20590249 |
aacttgagattca-ttctcaaacattagatagcaatcacaaatacactca |
20590297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 285
Target Start/End: Original strand, 24226120 - 24226217
Alignment:
| Q |
188 |
tttcaacttgagattcaattctcaaacatcggataccaatcacaaatacactcaagcatccaatatataaatggcgcatcttttatagtgtatttgaa |
285 |
Q |
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|||||| |||||||||||||| ||||||| |||| |||| | |||| |||||||| |||| | |||| |||| || |||||||||||||||||| |
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| T |
24226120 |
tttcaatttgagattcaattcccaaacattagataacaatgatgaatatactcaagcctccactgtatatttggcaaatattttatagtgtatttgaa |
24226217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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