View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2568_low_38 (Length: 301)

Name: NF2568_low_38
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2568_low_38
NF2568_low_38
[»] chr2 (2 HSPs)
chr2 (135-301)||(37808310-37808476)
chr2 (1-36)||(37808577-37808612)


Alignment Details
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 135 - 301
Target Start/End: Complemental strand, 37808476 - 37808310
Alignment:
Q  135 gtgaagaatgattttgttgggaaatcaattcatcaaattatctatatatccattaagggcacgagtgtaaatttaagagatacatttttaaaagctggat 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  37808476 gtgaagaatgattttgttgggaaatcaattcatcaaattatctatatatccattaagggcacgagtgtaaatttaagagatacatttttaaaaaatggat 37808377  T
Q  235 ggatatatctccacggttggaaaattctacaattttaaagagtggtagaatcattaattttcacatt 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37808376 ggatatatctccacggttggaaaattctacaattttaaagagtggtagaatcattaattttcacatt 37808310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 37808612 - 37808577
Alignment:
Q  1 acttttgagttcttgagctttttgggttaatgatgc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  37808612 acttttgagttcttgagctttttgggttaatgatgc 37808577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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