View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2568_low_4 (Length: 833)

Name: NF2568_low_4
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2568_low_4
NF2568_low_4
[»] chr1 (6 HSPs)
chr1 (253-719)||(40338897-40339351)
chr1 (19-131)||(40338684-40338788)
chr1 (757-821)||(40339364-40339428)
chr1 (478-535)||(27580775-27580832)
chr1 (617-666)||(40329382-40329431)
chr1 (206-240)||(40338863-40338897)
[»] chr5 (3 HSPs)
chr5 (464-535)||(34821930-34822001)
chr5 (466-523)||(15069810-15069867)
chr5 (479-523)||(33160714-33160758)
[»] chr6 (5 HSPs)
chr6 (478-523)||(18239269-18239314)
chr6 (488-535)||(19238571-19238618)
chr6 (468-516)||(18239165-18239213)
chr6 (433-468)||(21917386-21917421)
chr6 (485-531)||(2949695-2949741)
[»] chr8 (1 HSPs)
chr8 (478-535)||(25105740-25105797)
[»] chr4 (3 HSPs)
chr4 (473-530)||(8019987-8020044)
chr4 (470-535)||(14122792-14122856)
chr4 (490-535)||(29924365-29924410)
[»] chr7 (1 HSPs)
chr7 (435-468)||(43119252-43119285)


Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 253 - 719
Target Start/End: Original strand, 40338897 - 40339351
Alignment:
Q  253 tatgtcaacatgtaggtaacaccgcatattttaacatgaagagcatccctgagaaaagcatcagacgttcaaatctaacatgcgtggatactcaagatag 352  Q
    |||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40338897 tatgtctacatgtaggtaacaccgcacattttaacttgaagagcatccctgagaaaagcatcagacgttcaaatctaacatgcgtggatactcaagatag 40338996  T
Q  353 tgaggagaattgttgctcaggagtttggatgacttgttgagttaagatcctttttatttcttaaaataaatgtcaatatatccattattatagttttgta 452  Q
    |||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||       
T  40338997 tgagtagaattgttgctcgggagtttggatgacttggtgagttaagatcctttttatttcttaaaataaatgtcaatat--ccattattatagtttt--- 40339091  T
Q  453 gtaaatacatgatatatttatacatcaaaattatagtaatggatattgtcatttattttagaaaatggagatgatctctactctaactttacgcaaattg 552  Q
      || |||||     ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  40339092 --aattacat-----atttatacatcaaaactataataatggatattgtcatttattttagaaaatggagatgatatctactctaactttacgcaaactg 40339184  T
Q  553 cctcaagtattgatcacgaaattacagcctaagagacaaagcctccatttcttaactatcgagttgatgacacatgattccctaacataagtggatgcat 652  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  40339185 cctcaagtattgatcacgaaattacagcccaagatacaaagcctccatttcttaaccatcgagttgatgacacatgattccctaacataagtggatgcac 40339284  T
Q  653 ttggcatcttttggaagaaaacaaagttgtaatcaatgctttacaaactgaaccagcgatacctcca 719  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  40339285 ttggcatcttttggaagaaaacaaagttgtaatcaatgctttacaaactgaaccagcgagacctcca 40339351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 40338684 - 40338788
Alignment:
Q  19 atagtatacgacaatatgtaccaaccaattttaaaatctaaaattctgtcctggatgacaaattaatgtcgtgacaattctgtccttataagaagattcc 118  Q
    |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40338684 atagtatacgacaatatgtaccaaccaattttaaaatct--------gtcctggatgacaaattaatgtcgtgacaattctgtccttataagaagattcc 40338775  T
Q  119 ttccaaacaattg 131  Q
    |||||||||||||    
T  40338776 ttccaaacaattg 40338788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 757 - 821
Target Start/End: Original strand, 40339364 - 40339428
Alignment:
Q  757 atgtttaacaaatgaataaatagattttttatatgttagatcctgatactttttacaccaatatt 821  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40339364 atgtttaacaaatgaataaatagattttttatatgttagatcctgatactttttacaccaatatt 40339428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 478 - 535
Target Start/End: Original strand, 27580775 - 27580832
Alignment:
Q  478 caaaattatagtaatggatattgtcatttattttagaaaatggagatgatctctactc 535  Q
    ||||||||||||||| || ||||||||||||||||||||||  ||| |||||| ||||    
T  27580775 caaaattatagtaatagacattgtcatttattttagaaaataaagaggatctcaactc 27580832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 617 - 666
Target Start/End: Original strand, 40329382 - 40329431
Alignment:
Q  617 tgatgacacatgattccctaacataagtggatgcatttggcatcttttgg 666  Q
    ||||||||||| ||||| ||| |||||||||||||||| |||||||||||    
T  40329382 tgatgacacataattccttaatataagtggatgcatttagcatcttttgg 40329431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 40338863 - 40338897
Alignment:
Q  206 agtaacatgtctaaggtgagtactgaatgatattt 240  Q
    ||||||||||||||||||||||| |||||||||||    
T  40338863 agtaacatgtctaaggtgagtaccgaatgatattt 40338897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 464 - 535
Target Start/End: Complemental strand, 34822001 - 34821930
Alignment:
Q  464 atatatttatacatcaaaattatagtaatggatattgtcatttattttagaaaatggagatgatctctactc 535  Q
    |||||| |||||| ||||| |||| ||||| | ||||||||||||||||||||||||||| ||||| |||||    
T  34822001 atatatctatacaccaaaactatactaatgaaaattgtcatttattttagaaaatggagaggatctttactc 34821930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 466 - 523
Target Start/End: Original strand, 15069810 - 15069867
Alignment:
Q  466 atatttatacatcaaaattatagtaatggatattgtcatttattttagaaaatggaga 523  Q
    ||||||||||||||||| ||||| |||| |||||| ||||||||||||||||| ||||    
T  15069810 atatttatacatcaaaactatagaaatgaatattgacatttattttagaaaatagaga 15069867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 479 - 523
Target Start/End: Original strand, 33160714 - 33160758
Alignment:
Q  479 aaaattatagtaatggatattgtcatttattttagaaaatggaga 523  Q
    |||| |||||||||||| |||| ||||||||||||||||||||||    
T  33160714 aaaactatagtaatggacattgccatttattttagaaaatggaga 33160758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 478 - 523
Target Start/End: Original strand, 18239269 - 18239314
Alignment:
Q  478 caaaattatagtaatggatattgtcatttattttagaaaatggaga 523  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||    
T  18239269 caaaaatatagtaatggatattgtcatttattgtagaaaatggaga 18239314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 488 - 535
Target Start/End: Complemental strand, 19238618 - 19238571
Alignment:
Q  488 gtaatggatattgtcatttattttagaaaatggagatgatctctactc 535  Q
    |||||||||||||||||||||| ||||||||||||| |||||| ||||    
T  19238618 gtaatggatattgtcatttattatagaaaatggagaggatctcaactc 19238571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 468 - 516
Target Start/End: Complemental strand, 18239213 - 18239165
Alignment:
Q  468 atttatacatcaaaattatagtaatggatattgtcatttattttagaaa 516  Q
    |||||||||  |||| |||||||||||||||||||||||||| ||||||    
T  18239213 atttatacactaaaactatagtaatggatattgtcatttattatagaaa 18239165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 468
Target Start/End: Original strand, 21917386 - 21917421
Alignment:
Q  433 tccattattatagttttgtagtaaatacatgatata 468  Q
    ||||||| ||||||||||||||||||||||||||||    
T  21917386 tccattactatagttttgtagtaaatacatgatata 21917421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 485 - 531
Target Start/End: Original strand, 2949695 - 2949741
Alignment:
Q  485 atagtaatggatattgtcatttattttagaaaatggagatgatctct 531  Q
    ||||||||| | ||||||||||||| ||| |||||||||||||||||    
T  2949695 atagtaatgaacattgtcatttattatagtaaatggagatgatctct 2949741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 478 - 535
Target Start/End: Original strand, 25105740 - 25105797
Alignment:
Q  478 caaaattatagtaatggatattgtcatttattttagaaaatggagatgatctctactc 535  Q
    ||||| ||||||||||||| ||  ||||||||||||||||||||||| ||||| ||||    
T  25105740 caaaactatagtaatggatgttaccatttattttagaaaatggagataatctcaactc 25105797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 473 - 530
Target Start/End: Original strand, 8019987 - 8020044
Alignment:
Q  473 tacatcaaaattatagtaatggatattgtcatttattttagaaaatggagatgatctc 530  Q
    |||||||||| |||||||||| | |||| ||||||||||||||||| |||| ||||||    
T  8019987 tacatcaaaactatagtaatgaacattgccatttattttagaaaattgagaggatctc 8020044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 470 - 535
Target Start/End: Original strand, 14122792 - 14122856
Alignment:
Q  470 ttatacatcaaaattatagtaatggatattgtcatttattttagaaaatggagatgatctctactc 535  Q
    ||||||| |||||||||||||||| ||||||||||||||||||  ||||||| | || ||||||||    
T  14122792 ttatacaacaaaattatagtaatg-atattgtcatttattttaagaaatggaaaggaactctactc 14122856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 490 - 535
Target Start/End: Original strand, 29924365 - 29924410
Alignment:
Q  490 aatggatattgtcatttattttagaaaatggagatgatctctactc 535  Q
    |||||| |||||||||||||||||||||||||||  ||||||||||    
T  29924365 aatggacattgtcatttattttagaaaatggagaatatctctactc 29924410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 435 - 468
Target Start/End: Original strand, 43119252 - 43119285
Alignment:
Q  435 cattattatagttttgtagtaaatacatgatata 468  Q
    ||||| ||||||||||||||||||||||||||||    
T  43119252 cattactatagttttgtagtaaatacatgatata 43119285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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