View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2568_low_40 (Length: 291)

Name: NF2568_low_40
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2568_low_40
NF2568_low_40
[»] chr7 (11 HSPs)
chr7 (1-212)||(5267481-5267691)
chr7 (220-279)||(5268356-5268415)
chr7 (220-279)||(6944694-6944753)
chr7 (224-257)||(3223647-3223680)
chr7 (224-257)||(12173168-12173201)
chr7 (224-257)||(21908131-21908164)
chr7 (227-267)||(41932601-41932641)
chr7 (220-267)||(30129172-30129219)
chr7 (228-257)||(21981970-21981999)
chr7 (224-257)||(29104981-29105014)
chr7 (247-279)||(48942909-48942941)
[»] chr4 (7 HSPs)
chr4 (220-279)||(18302337-18302396)
chr4 (141-190)||(12224467-12224516)
chr4 (224-257)||(29323157-29323190)
chr4 (220-267)||(48851441-48851488)
chr4 (226-257)||(49626349-49626380)
chr4 (224-257)||(31068161-31068194)
chr4 (220-252)||(18032080-18032112)
[»] chr3 (5 HSPs)
chr3 (220-279)||(13234503-13234562)
chr3 (220-279)||(35097347-35097406)
chr3 (224-257)||(20551410-20551443)
chr3 (224-257)||(51830954-51830987)
chr3 (224-273)||(10266089-10266138)
[»] chr8 (4 HSPs)
chr8 (220-279)||(8768602-8768661)
chr8 (224-257)||(19392129-19392162)
chr8 (224-257)||(35467017-35467050)
chr8 (224-257)||(12318111-12318144)
[»] chr1 (5 HSPs)
chr1 (220-267)||(20015309-20015356)
chr1 (224-257)||(15232198-15232231)
chr1 (224-257)||(16291324-16291357)
chr1 (224-257)||(17202306-17202339)
chr1 (224-257)||(8263472-8263505)
[»] chr2 (7 HSPs)
chr2 (220-279)||(44511624-44511683)
chr2 (224-257)||(14709741-14709774)
chr2 (224-257)||(39164443-39164476)
chr2 (141-189)||(13475954-13476002)
chr2 (224-254)||(5156763-5156793)
chr2 (224-257)||(20912616-20912649)
chr2 (220-252)||(37874715-37874747)
[»] chr6 (4 HSPs)
chr6 (224-257)||(10130315-10130348)
chr6 (231-279)||(14174511-14174559)
chr6 (231-279)||(14179047-14179095)
chr6 (224-257)||(26241830-26241863)
[»] chr5 (5 HSPs)
chr5 (224-257)||(26720022-26720055)
chr5 (224-257)||(26989768-26989801)
chr5 (142-206)||(5465398-5465463)
chr5 (224-253)||(27426612-27426641)
chr5 (142-190)||(10273268-10273316)
[»] scaffold0017 (1 HSPs)
scaffold0017 (228-257)||(188898-188927)


Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 5267481 - 5267691
Alignment:
Q  1 tcctttcattcataattgatctcttttttcattgaattttgtatgaattgttgttgagnnnnnnnattaatcatcatctgattattttttaattttagat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  5267481 tcctttcattcataattgatctcttttttcattgaattttgtatgaattgttgttgagtttttttattaatcatcatctgattattttttaattttagat 5267580  T
Q  101 cattctggaacttgtgttcactctagctttgttcattctggaattgattttgtaaaatttattttagttataagttaattgaatgtaaaagatttacgtt 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||    
T  5267581 cattctggaacttgtgttcactct-gctttgttcattctggaattgattttgtaaaattgattttagttataagttaattgaacgtaaaagatttatgtt 5267679  T
Q  201 tggatgcaaatt 212  Q
    ||||| ||||||    
T  5267680 tggatacaaatt 5267691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 220 - 279
Target Start/End: Original strand, 5268356 - 5268415
Alignment:
Q  220 gaagagcttaattctaggaaaaatggaatttccacgacgatggcaaaaccctctgatatt 279  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5268356 gaagagcttaattctaggaaaaatggaatttccatgacgatggcaaaaccctctgatatt 5268415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 220 - 279
Target Start/End: Original strand, 6944694 - 6944753
Alignment:
Q  220 gaagagcttaattctaggaaaaatggaatttccacgacgatggcaaaaccctctgatatt 279  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  6944694 gaagagcttaattctaggaaaaatggaatttcccccacgatggcaaaaccctctgatatt 6944753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 257
Target Start/End: Complemental strand, 3223680 - 3223647
Alignment:
Q  224 agcttaattctaggaaaaatggaatttccacgac 257  Q
    ||||||||||||||||||||||||||||||||||    
T  3223680 agcttaattctaggaaaaatggaatttccacgac 3223647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 12173168 - 12173201
Alignment:
Q  224 agcttaattctaggaaaaatggaatttccacgac 257  Q
    ||||||||||||||||||||||||||||||||||    
T  12173168 agcttaattctaggaaaaatggaatttccacgac 12173201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 257
Target Start/End: Complemental strand, 21908164 - 21908131
Alignment:
Q  224 agcttaattctaggaaaaatggaatttccacgac 257  Q
    ||||||||||||||||||||||||||||||||||    
T  21908164 agcttaattctaggaaaaatggaatttccacgac 21908131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 41932601 - 41932641
Alignment:
Q  227 ttaattctaggaaaaatggaatttccacgacgatggcaaaa 267  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  41932601 ttaattctaggaaaaatggaatttccacaatgatggcaaaa 41932641  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 30129172 - 30129219
Alignment:
Q  220 gaagagcttaattctaggaaaaatggaatttccacgacgatggcaaaa 267  Q
    ||||| |||||||||||||||||| ||||||||| || ||||||||||    
T  30129172 gaagatcttaattctaggaaaaattgaatttccatgatgatggcaaaa 30129219  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 257
Target Start/End: Complemental strand, 21981999 - 21981970
Alignment:
Q  228 taattctaggaaaaatggaatttccacgac 257  Q
    ||||||||||||||||||||||||||||||    
T  21981999 taattctaggaaaaatggaatttccacgac 21981970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 257
Target Start/End: Complemental strand, 29105014 - 29104981
Alignment:
Q  224 agcttaattctaggaaaaatggaatttccacgac 257  Q
    ||||||||||||||||||||| ||||||||||||    
T  29105014 agcttaattctaggaaaaatgaaatttccacgac 29104981  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 48942941 - 48942909
Alignment:
Q  247 atttccacgacgatggcaaaaccctctgatatt 279  Q
    |||||||| ||||||||||||||||||||||||    
T  48942941 atttccaccacgatggcaaaaccctctgatatt 48942909  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 220 - 279
Target Start/End: Complemental strand, 18302396 - 18302337
Alignment:
Q  220 gaagagcttaattctaggaaaaatggaatttccacgacgatggcaaaaccctctgatatt 279  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18302396 gaagagcttaattctaggaaaaatggaatttccaccacgatggcaaaaccctctgatatt 18302337  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 12224516 - 12224467
Alignment:
Q  141 gaattgattttgtaaaatttattttagttataagttaattgaatgtaaaa 190  Q
    |||||||||||||||||||||||||||||| |||| | ||||||| ||||    
T  12224516 gaattgattttgtaaaatttattttagttaaaagtaagttgaatgcaaaa 12224467  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 29323157 - 29323190
Alignment:
Q  224 agcttaattctaggaaaaatggaatttccacgac 257  Q
    ||||||||||||||||||||||||||||||||||    
T  29323157 agcttaattctaggaaaaatggaatttccacgac 29323190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 48851441 - 48851488
Alignment:
Q  220 gaagagcttaattctaggaaaaatggaatttccacgacgatggcaaaa 267  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||| ||||    
T  48851441 gaagagcttaattctaggaaaaatgaaattttcacgatgatggaaaaa 48851488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 257
Target Start/End: Original strand, 49626349 - 49626380
Alignment:
Q  226 cttaattctaggaaaaatggaatttccacgac 257  Q
    ||||||||||||||||||||||||||||||||    
T  49626349 cttaattctaggaaaaatggaatttccacgac 49626380  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 31068161 - 31068194
Alignment:
Q  224 agcttaattctaggaaaaatggaatttccacgac 257  Q
    ||||||||||||||||||||| ||||||||||||    
T  31068161 agcttaattctaggaaaaatgaaatttccacgac 31068194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 18032112 - 18032080
Alignment:
Q  220 gaagagcttaattctaggaaaaatggaatttcc 252  Q
    ||||||||||||||||| |||||||||||||||    
T  18032112 gaagagcttaattctagaaaaaatggaatttcc 18032080  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 220 - 279
Target Start/End: Complemental strand, 13234562 - 13234503
Alignment:
Q  220 gaagagcttaattctaggaaaaatggaatttccacgacgatggcaaaaccctctgatatt 279  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13234562 gaagagcttaattctaggaaaaatggaatttccaccacgatggcaaaaccctctgatatt 13234503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 220 - 279
Target Start/End: Complemental strand, 35097406 - 35097347
Alignment:
Q  220 gaagagcttaattctaggaaaaatggaatttccacgacgatggcaaaaccctctgatatt 279  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||  ||||||||||    
T  35097406 gaagagcttaattctagaaaaaatggaatttccacgatgatggcaaaatactctgatatt 35097347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 20551410 - 20551443
Alignment:
Q  224 agcttaattctaggaaaaatggaatttccacgac 257  Q
    ||||||||||||||||||||||||||||||||||    
T  20551410 agcttaattctaggaaaaatggaatttccacgac 20551443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 257
Target Start/End: Complemental strand, 51830987 - 51830954
Alignment:
Q  224 agcttaattctaggaaaaatggaatttccacgac 257  Q
    ||||||||||||||||||||||||||||||||||    
T  51830987 agcttaattctaggaaaaatggaatttccacgac 51830954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 10266138 - 10266089
Alignment:
Q  224 agcttaattctaggaaaaatggaatttccacgacgatggcaaaaccctct 273  Q
    |||||||||||||||||| |||||||||||||||  |  |||||||||||    
T  10266138 agcttaattctaggaaaattggaatttccacgactttttcaaaaccctct 10266089  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 279
Target Start/End: Original strand, 8768602 - 8768661
Alignment:
Q  220 gaagagcttaattctaggaaaaatggaatttccacgacgatggcaaaaccctctgatatt 279  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||    
T  8768602 gaagagcttaattctagaaaaaatggaatttccaccacgatggcaaaaccctttgatatt 8768661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 257
Target Start/End: Complemental strand, 19392162 - 19392129
Alignment:
Q  224 agcttaattctaggaaaaatggaatttccacgac 257  Q
    ||||||||||||||||||||||||||||||||||    
T  19392162 agcttaattctaggaaaaatggaatttccacgac 19392129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 35467017 - 35467050
Alignment:
Q  224 agcttaattctaggaaaaatggaatttccacgac 257  Q
    ||||||||||||||||||||||||||||||||||    
T  35467017 agcttaattctaggaaaaatggaatttccacgac 35467050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 257
Target Start/End: Complemental strand, 12318144 - 12318111
Alignment:
Q  224 agcttaattctaggaaaaatggaatttccacgac 257  Q
    ||||||||||||||||||||| ||||||||||||    
T  12318144 agcttaattctaggaaaaatgaaatttccacgac 12318111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 20015309 - 20015356
Alignment:
Q  220 gaagagcttaattctaggaaaaatggaatttccacgacgatggcaaaa 267  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  20015309 gaagagcttaattctaggaaaaatggaatttccacgatgatggcaaaa 20015356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 257
Target Start/End: Complemental strand, 15232231 - 15232198
Alignment:
Q  224 agcttaattctaggaaaaatggaatttccacgac 257  Q
    ||||||||||||||||||||||||||||||||||    
T  15232231 agcttaattctaggaaaaatggaatttccacgac 15232198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 16291324 - 16291357
Alignment:
Q  224 agcttaattctaggaaaaatggaatttccacgac 257  Q
    ||||||||||||||||||||||||||||||||||    
T  16291324 agcttaattctaggaaaaatggaatttccacgac 16291357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 17202306 - 17202339
Alignment:
Q  224 agcttaattctaggaaaaatggaatttccacgac 257  Q
    ||||||||||||||||||||||||||||||||||    
T  17202306 agcttaattctaggaaaaatggaatttccacgac 17202339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 8263472 - 8263505
Alignment:
Q  224 agcttaattctaggaaaaatggaatttccacgac 257  Q
    ||||||||||||||||||||| ||||||||||||    
T  8263472 agcttaattctaggaaaaatgaaatttccacgac 8263505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 279
Target Start/End: Complemental strand, 44511683 - 44511624
Alignment:
Q  220 gaagagcttaattctaggaaaaatggaatttccacgacgatggcaaaaccctctgatatt 279  Q
    ||||||||||||||||| ||||||| ||||||||||| |||| |||||| ||||||||||    
T  44511683 gaagagcttaattctagaaaaaatgaaatttccacgatgatgacaaaactctctgatatt 44511624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 257
Target Start/End: Complemental strand, 14709774 - 14709741
Alignment:
Q  224 agcttaattctaggaaaaatggaatttccacgac 257  Q
    ||||||||||||||||||||||||||||||||||    
T  14709774 agcttaattctaggaaaaatggaatttccacgac 14709741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 39164443 - 39164476
Alignment:
Q  224 agcttaattctaggaaaaatggaatttccacgac 257  Q
    ||||||||||||||||||||||||||||||||||    
T  39164443 agcttaattctaggaaaaatggaatttccacgac 39164476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 13476002 - 13475954
Alignment:
Q  141 gaattgattttgtaaaatttattttagttataagttaattgaatgtaaa 189  Q
    ||||||||||||| ||||| |||||| |||||||| |||||||||||||    
T  13476002 gaattgattttgttaaattgattttacttataagtgaattgaatgtaaa 13475954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 254
Target Start/End: Original strand, 5156763 - 5156793
Alignment:
Q  224 agcttaattctaggaaaaatggaatttccac 254  Q
    |||||||||||||||||||||||||||||||    
T  5156763 agcttaattctaggaaaaatggaatttccac 5156793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 20912616 - 20912649
Alignment:
Q  224 agcttaattctaggaaaaatggaatttccacgac 257  Q
    ||||||||||||||||||||| ||||||||||||    
T  20912616 agcttaattctaggaaaaatgaaatttccacgac 20912649  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 37874747 - 37874715
Alignment:
Q  220 gaagagcttaattctaggaaaaatggaatttcc 252  Q
    ||||||||||||||||| |||||||||||||||    
T  37874747 gaagagcttaattctagaaaaaatggaatttcc 37874715  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 257
Target Start/End: Complemental strand, 10130348 - 10130315
Alignment:
Q  224 agcttaattctaggaaaaatggaatttccacgac 257  Q
    ||||||||||||||||||||||||||||||||||    
T  10130348 agcttaattctaggaaaaatggaatttccacgac 10130315  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 14174511 - 14174559
Alignment:
Q  231 ttctaggaaaaatggaatttccacgacgatggcaaaaccctctgatatt 279  Q
    |||||||||||||||||||||||||||||| | ||||| |||| |||||    
T  14174511 ttctaggaaaaatggaatttccacgacgatagaaaaacactctaatatt 14174559  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 14179047 - 14179095
Alignment:
Q  231 ttctaggaaaaatggaatttccacgacgatggcaaaaccctctgatatt 279  Q
    |||||||||||||||||||||||||||||| | ||||| |||| |||||    
T  14179047 ttctaggaaaaatggaatttccacgacgatagaaaaacactctaatatt 14179095  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 257
Target Start/End: Complemental strand, 26241863 - 26241830
Alignment:
Q  224 agcttaattctaggaaaaatggaatttccacgac 257  Q
    ||||||||||||||||||||| ||||||||||||    
T  26241863 agcttaattctaggaaaaatgaaatttccacgac 26241830  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 26720022 - 26720055
Alignment:
Q  224 agcttaattctaggaaaaatggaatttccacgac 257  Q
    ||||||||||||||||||||||||||||||||||    
T  26720022 agcttaattctaggaaaaatggaatttccacgac 26720055  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 26989768 - 26989801
Alignment:
Q  224 agcttaattctaggaaaaatggaatttccacgac 257  Q
    ||||||||||||||||||||||||||||||||||    
T  26989768 agcttaattctaggaaaaatggaatttccacgac 26989801  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 5465398 - 5465463
Alignment:
Q  142 aattgattttgtaaaatttattttagttataagttaattgaatgtaaaa-gatttacgtttggatg 206  Q
    |||||||||||||||||| ||||||| || |||| ||||||||| |||| |||||| |||| ||||    
T  5465398 aattgattttgtaaaattgattttagataaaagtgaattgaatgaaaaatgatttatgtttagatg 5465463  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 253
Target Start/End: Complemental strand, 27426641 - 27426612
Alignment:
Q  224 agcttaattctaggaaaaatggaatttcca 253  Q
    ||||||||||||||||||||||||||||||    
T  27426641 agcttaattctaggaaaaatggaatttcca 27426612  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 10273268 - 10273316
Alignment:
Q  142 aattgattttgtaaaatttattttagttataagttaattgaatgtaaaa 190  Q
    |||||||||||||||||| |||||| |||||||| | |||||| |||||    
T  10273268 aattgattttgtaaaattaattttacttataagtgagttgaatataaaa 10273316  T

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Target: scaffold0017 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 257
Target Start/End: Complemental strand, 188927 - 188898
Alignment:
Q  228 taattctaggaaaaatggaatttccacgac 257  Q
    ||||||||||||||||||||||||||||||    
T  188927 taattctaggaaaaatggaatttccacgac 188898  T

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