View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2568_low_41 (Length: 287)
Name: NF2568_low_41
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 26886655 - 26886404
Alignment:
| Q |
18 |
acaaagctccctctcggtcaactagaattgaattgatatgtatgataatgtatgtatttgtttctcaattgtatatacttttgatttgagctatatatgt |
117 |
Q |
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| T |
26886655 |
acaaagctccctctcggtcaactagaattgaattgatatgtatgataatgtatgtatttgtctctcaattgtatatacttttgatttgagctatatatgt |
26886556 |
T |
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| Q |
118 |
aaagaaaagatataataattcatgttcatgttgttcttgtgctttgtagtcgccacaagccgtgtttaagaaaatcttnnnnnnnnnnnnntccttggtt |
217 |
Q |
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| T |
26886555 |
aaagaaaagaaataataattcatgttcatgttgttcttgtgctttgtagacgccacaagccgtgtttaagaaaatctt-aaagaggaaaaatccttggtt |
26886457 |
T |
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| Q |
218 |
acgagaatgtatacaagaggaattcaatccagaaaattacagtaagattttcc |
270 |
Q |
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| T |
26886456 |
acgagaatgtataaaagaggaattcaatccagaaaattacagtaagattttcc |
26886404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 270
Target Start/End: Original strand, 26630912 - 26630946
Alignment:
| Q |
236 |
ggaattcaatccagaaaattacagtaagattttcc |
270 |
Q |
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|||||||||||||||| |||||||||||||||||| |
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| T |
26630912 |
ggaattcaatccagaatattacagtaagattttcc |
26630946 |
T |
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