View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2568_low_43 (Length: 279)
Name: NF2568_low_43
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_low_43 |
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| [»] chr5 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 27508816 - 27508538
Alignment:
| Q |
1 |
ctctagagagatcaaaatttcttaataacagcatatagaacaaaattaattagaataataataacaacttcaaattaattagggtttcttaccaagagtg |
100 |
Q |
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| T |
27508816 |
ctctagagagatcaaaatttcttaataacagcatatagaacaaaattaattagaataataataacaacttcaaattaattagggtttcttaccaagagtg |
27508717 |
T |
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| Q |
101 |
ttcttgttattgtgcatccaaactttaagaacatttctcttgatacaattctcagcacaaaactgttctatagcagcttcatcttgtttctgaattctcc |
200 |
Q |
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| T |
27508716 |
ttcttgttattgtgcatccaaactttaagaacatttctcttgatacaattctcagcacaaaactgttctatagcagcttcatcttgtttctgaattctcc |
27508617 |
T |
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| Q |
201 |
aaccatgttcttcagcaaaagccagcaatttctctttctgttcctgagtgaattttgttctgaatctcttccttgatcc |
279 |
Q |
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| T |
27508616 |
aaccatgttcttctgcaaaagccagcaatttctctttctgttcctgagtgaattttgttctgaatctcttccttgatcc |
27508538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 14021393 - 14021447
Alignment:
| Q |
80 |
tagggtttcttaccaagagtgttcttgttattgtgcatccaaactttaagaacat |
134 |
Q |
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| T |
14021393 |
tagggcttcttaccaagagtgtgtttgttgttatgcatccaaaccttaagaacat |
14021447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 79 - 261
Target Start/End: Original strand, 46300648 - 46300830
Alignment:
| Q |
79 |
ttagggtttcttaccaagagtgttcttgttattgtgcatccaaactttaagaacatttctcttgatacaattctcagcacaaaactgttctatagcagct |
178 |
Q |
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| T |
46300648 |
ttagggtttcttaccaagagtgtgcttgttattgtgcatccaaaccttaagcacatgtctcttgataaaattctcagcacagaattgttcaattgcacct |
46300747 |
T |
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| Q |
179 |
tcatcttgtttctgaattctccaaccatgttcttcagcaaaagccagcaatttctctttctgttcctgagtgaattttgttct |
261 |
Q |
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| T |
46300748 |
tcatcttccttctgaattctccacccaattttctccgcaaatgcaagcatcttatccttttgttcctgcgtgaattttgttct |
46300830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 279
Target Start/End: Original strand, 44747880 - 44747913
Alignment:
| Q |
246 |
gagtgaattttgttctgaatctcttccttgatcc |
279 |
Q |
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| T |
44747880 |
gagtgaattttgttctgaatctcttctttgatcc |
44747913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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