View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2568_low_50 (Length: 252)
Name: NF2568_low_50
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 36 - 241
Target Start/End: Original strand, 15722075 - 15722285
Alignment:
| Q |
36 |
aaaaatttacaaggtttgtttatataatatataggttttatatccaagaggctctcatttaaagaaacataagatattttataatggtattataaaacta |
135 |
Q |
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| T |
15722075 |
aaaaatttacaaggtttgtttatataatatataggttttatatccaagaggctctcatttaaagaaacataagatattttataatggtattataaaacta |
15722174 |
T |
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| Q |
136 |
tttctaggaatagttggattattacacacatatttttcatttaaattcaatatg-----ttgataagatatgatcagcaaaactcacatgtaatagaaga |
230 |
Q |
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| T |
15722175 |
tttctaggaatagttggattattacacacatatttttcatttaaattcaatatgttgaattgataagatatgatcagcaaaactcacatgtaatagaaga |
15722274 |
T |
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| Q |
231 |
ctttgcctatg |
241 |
Q |
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| T |
15722275 |
ctttgcctatg |
15722285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15722016 - 15722052
Alignment:
| Q |
1 |
cagaaaatctaaaaatccatttaagttatcaccacaa |
37 |
Q |
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| T |
15722016 |
cagaaaatctaaaaatccatttaagttatcaccacaa |
15722052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 15697011 - 15697064
Alignment:
| Q |
188 |
tgttgataagatatgatcagcaaaactcacatgtaatagaagactttgcctatg |
241 |
Q |
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| T |
15697011 |
tgttgatgaaatgtgattagccaaactcacatataatagaagactttgcctatg |
15697064 |
T |
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