View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2568_low_52 (Length: 250)
Name: NF2568_low_52
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_low_52 |
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Alignment Details
Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 17494773 - 17494934
Alignment:
| Q |
17 |
tgctgtaattaattgcagccgtctgatcacaatggaaaggttaagattgttttaatgattatcacacagttttcaatctcaaccg--ttatttaagatga |
114 |
Q |
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| T |
17494773 |
tgctgtaattaattccagccgtctgatcacaatggaaaggttaagattgttttaacgataatcacacagttttcaatctcaaccgttttatctaagataa |
17494872 |
T |
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| Q |
115 |
acaattgagattgaaaactacatgctaattttacagcatcaaaacctagtccaaattcatgcaattc |
181 |
Q |
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| T |
17494873 |
acaactgagaatgaaa-----atgctaattttacagcatcaaaacctggtacaaattcatgcaattc |
17494934 |
T |
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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 47580713 - 47580567
Alignment:
| Q |
17 |
tgctgtaattaattgcagccgtctgatcacaatggaaaggttaagattgttttaatgattatcacacagttttcaatctcaaccgtt--atttaagatga |
114 |
Q |
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| T |
47580713 |
tgctgtaattaattacagccgtctgatcacaatgggaaggtcaggattgttttaattggaaatacacagttttcaatctcaaccgtttgatctgagataa |
47580614 |
T |
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| Q |
115 |
acaattgagattgaaaactacatgctaattttacagcatcaaaacct |
161 |
Q |
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| T |
47580613 |
tcagctgagattgaaaactgcatactaactttacagcatcaaaacct |
47580567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 30234578 - 30234660
Alignment:
| Q |
79 |
cacacagttttcaatctcaaccgtt--atttaagatgaacaattgagattgaaaactacatgctaattttacagcatcaaaac |
159 |
Q |
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| T |
30234578 |
cacaccgttttcaatctcaattgtttgatgtgagatgaacaattcagattgaaaactgcgtgataattttacagcaacaaaac |
30234660 |
T |
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