View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2568_low_53 (Length: 250)
Name: NF2568_low_53
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 25713493 - 25713728
Alignment:
| Q |
1 |
actatgacatgttttacaatgacaatcgtgaaaactttgcgcaaaactttaaagcagacaatacctcataaatgcgacttgagtttaaaacaaagtttat |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25713493 |
actaagacatgttttacaatgacaatcgtgaaaactttgcacaaaa-tttaaagcagacaatacctcataaatgcgacttgagttcaaaacaaagtttat |
25713591 |
T |
|
| Q |
101 |
agtttatcaattcggaatgagggtattcatatctaaatctgtacttcgtcattaagcaacacttaaagtgttcttcttatatttcacttatttccacctg |
200 |
Q |
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||||| ||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
25713592 |
agtttgtcaattcagaatgagggttttcatatctaaatctgttcttcgtcattaagcaacacttatagtg---ttcttatatttcacttatttccacctg |
25713688 |
T |
|
| Q |
201 |
ctcctctttgtttgtccctctgcctcactatcaacctttg |
240 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |
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| T |
25713689 |
ctcctctttgtttgcccctctgcctcactatcaacctttg |
25713728 |
T |
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