View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2568_low_57 (Length: 245)

Name: NF2568_low_57
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2568_low_57
NF2568_low_57
[»] chr3 (22 HSPs)
chr3 (1-230)||(22432207-22432436)
chr3 (1-156)||(42637959-42638121)
chr3 (1-204)||(3823547-3823758)
chr3 (1-204)||(3785858-3786068)
chr3 (2-207)||(9710728-9710934)
chr3 (1-163)||(31545565-31545722)
chr3 (9-122)||(5341861-5341974)
chr3 (3-107)||(4169110-4169214)
chr3 (1-203)||(44080153-44080362)
chr3 (1-114)||(1705673-1705786)
chr3 (1-122)||(19280183-19280303)
chr3 (7-95)||(13358101-13358189)
chr3 (1-99)||(26308643-26308741)
chr3 (5-107)||(42481300-42481402)
chr3 (17-94)||(27335402-27335479)
chr3 (135-203)||(31545423-31545491)
chr3 (1-120)||(19624293-19624411)
chr3 (2-67)||(11501310-11501375)
chr3 (41-122)||(11509888-11509969)
chr3 (3-117)||(34627304-34627419)
chr3 (17-83)||(27365008-27365074)
chr3 (74-122)||(41571828-41571876)
[»] chr7 (10 HSPs)
chr7 (7-205)||(20556661-20556866)
chr7 (1-202)||(31303351-31303559)
chr7 (1-122)||(21589608-21589729)
chr7 (1-202)||(21548351-21548558)
chr7 (1-204)||(18312723-18312932)
chr7 (1-122)||(4290812-4290932)
chr7 (3-116)||(22740664-22740776)
chr7 (1-98)||(28804993-28805089)
chr7 (1-205)||(5083795-5084005)
chr7 (168-202)||(32964651-32964685)
[»] chr8 (14 HSPs)
chr8 (1-204)||(38606831-38607041)
chr8 (1-204)||(1251480-1251689)
chr8 (1-122)||(1240904-1241024)
chr8 (19-122)||(29367076-29367179)
chr8 (8-117)||(5573770-5573879)
chr8 (1-117)||(5321965-5322081)
chr8 (1-122)||(15714698-15714819)
chr8 (7-202)||(31596693-31596894)
chr8 (8-117)||(26493347-26493455)
chr8 (3-98)||(6809804-6809900)
chr8 (6-203)||(31273570-31273774)
chr8 (17-94)||(15233241-15233318)
chr8 (36-117)||(32959550-32959631)
chr8 (61-122)||(33286202-33286263)
[»] chr4 (16 HSPs)
chr4 (3-200)||(16583496-16583700)
chr4 (1-202)||(33179762-33179970)
chr4 (1-119)||(33249619-33249737)
chr4 (7-122)||(9809059-9809174)
chr4 (1-116)||(1966836-1966950)
chr4 (7-123)||(9810744-9810860)
chr4 (3-116)||(8740796-8740908)
chr4 (7-117)||(2433702-2433811)
chr4 (1-116)||(19596773-19596888)
chr4 (1-115)||(42908560-42908674)
chr4 (3-117)||(35544425-35544538)
chr4 (13-115)||(55666841-55666942)
chr4 (17-82)||(24669209-24669274)
chr4 (16-83)||(17633359-17633426)
chr4 (72-122)||(20874818-20874868)
chr4 (1-49)||(14351120-14351168)
[»] chr5 (13 HSPs)
chr5 (1-117)||(35922722-35922838)
chr5 (5-117)||(22169447-22169559)
chr5 (1-115)||(13312590-13312704)
chr5 (1-117)||(33958983-33959099)
chr5 (3-150)||(43461706-43461859)
chr5 (1-115)||(42034749-42034862)
chr5 (2-82)||(19621477-19621557)
chr5 (20-84)||(43262708-43262772)
chr5 (17-94)||(30704398-30704476)
chr5 (16-122)||(38521986-38522091)
chr5 (122-201)||(35922607-35922686)
chr5 (59-122)||(36169394-36169457)
chr5 (1-59)||(2477302-2477360)
[»] chr6 (12 HSPs)
chr6 (7-122)||(33815025-33815140)
chr6 (1-122)||(10304703-10304824)
chr6 (16-122)||(3222416-3222522)
chr6 (1-99)||(138718-138816)
chr6 (1-99)||(146739-146837)
chr6 (1-95)||(2834974-2835068)
chr6 (1-115)||(22608352-22608466)
chr6 (1-98)||(3620763-3620860)
chr6 (1-49)||(2430610-2430658)
chr6 (1-99)||(9068414-9068511)
chr6 (1-163)||(23595091-23595250)
chr6 (18-63)||(9474673-9474718)
[»] chr2 (6 HSPs)
chr2 (1-115)||(1400777-1400891)
chr2 (1-115)||(30906054-30906168)
chr2 (4-117)||(43900518-43900631)
chr2 (5-122)||(45305952-45306068)
chr2 (1-117)||(28527326-28527441)
chr2 (1-83)||(33667339-33667421)
[»] chr1 (11 HSPs)
chr1 (1-115)||(29677088-29677202)
chr1 (2-122)||(42604203-42604323)
chr1 (1-117)||(29167813-29167928)
chr1 (3-117)||(25238467-25238580)
chr1 (7-117)||(34490178-34490287)
chr1 (1-116)||(38951896-38952013)
chr1 (17-122)||(9468094-9468199)
chr1 (5-115)||(34364224-34364333)
chr1 (18-94)||(2996025-2996101)
chr1 (1-66)||(5831573-5831638)
chr1 (1-49)||(2569966-2570014)
[»] scaffold1126 (1 HSPs)
scaffold1126 (1-115)||(212-326)
[»] scaffold0251 (1 HSPs)
scaffold0251 (5-201)||(10622-10825)
[»] scaffold0123 (1 HSPs)
scaffold0123 (1-117)||(24024-24139)
[»] scaffold0126 (1 HSPs)
scaffold0126 (70-122)||(21552-21604)
[»] scaffold0043 (1 HSPs)
scaffold0043 (17-83)||(87046-87112)
[»] scaffold0024 (1 HSPs)
scaffold0024 (17-94)||(112158-112235)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 22432436 - 22432207
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22432436 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttcagcttttaaatagtgga 22432337  T
Q  101 cacgcaactgaaaaaatatggtaccatattttttattaactgaaattttcgagagtaatacaaggatatgtacacattaaggatgcctaccaatctttat 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22432336 cacgcaactgaaaaaatatggtaccatatttttgattaactgaaattttcgagagtaatacaaggatatgtacacattaaggatgcctaccaatctttat 22432237  T
Q  201 tcttattcttttagatcttttagaaattgt 230  Q
    ||||||||||||||||||||||||||||||    
T  22432236 tcttattcttttagatcttttagaaattgt 22432207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 42637959 - 42638121
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    |||||||||||||| |||||||||||| ||||| || ||||||||||||  || |||||||||||||  |||||||||||||| |||| ||||||||||     
T  42637959 ccactattttttcagaatttatttggttaactaagttgaaaaatagtggttacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggt 42638058  T
Q  101 cacgcaactgaaaaaatatgg-------taccatattttttattaactgaaattttcgagagt 156  Q
    ||||||||||||||||| |||       |||||||| |||  |||||||||||||||||||||    
T  42638059 cacgcaactgaaaaaatgtggtcatatataccatatatttagttaactgaaattttcgagagt 42638121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 3823758 - 3823547
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccaca--tttttctgcttttaaatagtg 98  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||| ||||| |||||||||||||||||  |||||| |  |||||| |||| |||||||||    
T  3823758 ccactatttttccataatttatttggttaactaagtggaaaaa-agtggtcacacgcattttagttgcgtgaccatatttttttcagcttataaatagtg 3823660  T
Q  99 gacacgcaactgaaaaaatatggt-------accatattttttattaactgaaattttcgagagtaatacaaggatatgtacacattaaggatgcctacc 191  Q
    | |||||||| |||||||| ||||       |||||||  ||  |||||||||||||||||||||  ||||| |   |||||||||||||| || ||||     
T  3823659 gtcacgcaacagaaaaaatgtggtcacacagaccatataattggttaactgaaattttcgagagtggtacaaaggggtgtacacattaagggtgtctact 3823560  T
Q  192 aatctttattctt 204  Q
    |||||||||||||    
T  3823559 aatctttattctt 3823547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 3786068 - 3785858
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccaca-tttttctgcttttaaatagtgg 99  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||| ||||| ||| |||||||||||||  |||||| | |||||| |||| ||||||||||    
T  3786068 ccactatttttccataatttatttggttaactaagtggaaaaa-agtggtcacgcgcattttagttgcgtgaccatattttttcagcttataaatagtgg 3785970  T
Q  100 acacgcaactgaaaaaatatggt-------accatattttttattaactgaaattttcgagagtaatacaaggatatgtacacattaaggatgcctacca 192  Q
     |||| ||| |||||||| ||||       ||||||   ||  |||||||||||||||||||||  ||||| |   |||||||||||||| || ||||||    
T  3785969 tcacgtaacagaaaaaatgtggtcacacagaccataaaattggttaactgaaattttcgagagtggtacaaaggggtgtacacattaagggtgtctacca 3785870  T
Q  193 atctttattctt 204  Q
    ||||||||||||    
T  3785869 atctttattctt 3785858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 207
Target Start/End: Original strand, 9710728 - 9710934
Alignment:
Q  2 cactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggac 101  Q
    ||||| ||| ||| |||||||||||| ||||| ||||||||||||||| ||   | |||| |||||  |||||||| ||||| |||| ||| |||||| |    
T  9710728 cactagtttctcagaatttatttggttaactaagtggaaaaatagtggtcaagtgtattt-agttgcgtgaccacagttttcagcttctaagtagtggtc 9710826  T
Q  102 acgcaactgaaaaaatatggt--accatattttttattaactgaaattttcgagagtaatacaaggatatgtacacattaaggatgcctaccaatcttta 199  Q
    ||||||| |||||||||||||  ||||||| |||  ||||||||||||||  |||||  ||||| |   |||||| ||||||| |  |||||||||||||    
T  9710827 acgcaaccgaaaaaatatggtcaaccatatatttggttaactgaaatttttcagagtggtacaaaggggtgtacatattaagggtttctaccaatcttta 9710926  T
Q  200 ttcttatt 207  Q
    ||||||||    
T  9710927 ttcttatt 9710934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 31545722 - 31545565
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    ||||||||||| || ||||||||| || ||||| || |||||||||||| ||  | |||||||||||  |||||||||||||| |||| ||||||||||     
T  31545722 ccactatttttccagaatttattttgttaactaagtagaaaaatagtggtcatgcacattttagttgtgtgaccacatttttcagcttctaaatagtggt 31545623  T
Q  101 cacgcaactgaaaaaatatggtaccatattttttattaactgaaattttcgagagtaatacaa 163  Q
     || ||||||||||||| ||     |||| |||  |||||||||||||||||||||| |||||    
T  31545622 tactcaactgaaaaaatgtg-----atatatttggttaactgaaattttcgagagtagtacaa 31545565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 5341974 - 5341861
Alignment:
Q  9 ttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggacacgcaac 108  Q
    |||||| |||||||||||| ||||| ||||||||||||||| || | | ||||||||||  ||||||||||||||  ||| |||||||||| |||||| |    
T  5341974 ttttcagaatttatttggttaactaagtggaaaaatagtggtcatatgtattttagttgtatgaccacatttttcaacttctaaatagtggtcacgcagc 5341875  T
Q  109 tgaaaaaatatggt 122  Q
    | ||||||||||||    
T  5341874 taaaaaaatatggt 5341861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 4169110 - 4169214
Alignment:
Q  3 actattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggaca 102  Q
    |||||||||||| |||||||||||| |||||  |||||||||||||| ||| | |||||||||||  | |||||||||||| |||| |||||||||| ||    
T  4169110 actattttttcagaatttatttggttaactaaatggaaaaatagtggtcacgcacattttagttgcgttaccacatttttcagcttctaaatagtggtca 4169209  T
Q  103 cgcaa 107  Q
    |||||    
T  4169210 cgcaa 4169214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 44080362 - 44080153
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    ||||||||||| || ||||| |||||| ||||| ||||||||||||||| ||| | ||||||||||   ||||||||||||||  ||| ||||||||||     
T  44080362 ccactatttttccaaaatttttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttcaacttctaaatagtggt 44080264  T
Q  101 cacgcaactg-aaaaaatatggt-------accatattttttattaactgaaattttcgagagtaatacaaggatatgtacacattaaggatgcctacca 192  Q
    |||||||||| ||||||||||||       |  |||| |||  |||||||||||| |  |||||  ||||| ||||||||||||||||||||  ||| |     
T  44080263 cacgcaactgcaaaaaatatggtcacacagattatatatttggttaactgaaattgttcagagtggtacaaagatatgtacacattaaggatatctatcg 44080164  T
Q  193 atctttattct 203  Q
    |||||||||||    
T  44080163 atctttattct 44080153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 1705673 - 1705786
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    |||||| |||| || || ||||||||| ||||| | ||||||||||||| ||| |||||||||||||  |||||| ||||||| |||| ||||||||||     
T  1705673 ccactagttttccagaaattatttggttaactaaggggaaaaatagtggtcacgcgcattttagttgcatgaccatatttttcagcttctaaatagtggt 1705772  T
Q  101 cacgcaactgaaaa 114  Q
    ||||||||| ||||    
T  1705773 cacgcaactaaaaa 1705786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 19280303 - 19280183
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    |||||| ||||||| |||||||||||| ||||| |||||||| |||||| ||| || ||||||||||  ||||||||||||||  ||| |||| |||||     
T  19280303 ccactaatttttcaaaatttatttggttaactaagtggaaaa-tagtggtcacgcgaattttagttgcgtgaccacatttttcaacttctaaacagtggt 19280205  T
Q  101 cacgcaactgaaaaaatatggt 122  Q
    |||||| |||||||||| ||||    
T  19280204 cacgcatctgaaaaaatgtggt 19280183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 13358101 - 13358189
Alignment:
Q  7 ttttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaata 95  Q
    |||||||| |||||||||||| |||||||||||||||||||||  || ||||||||| |||  |||||| ||||||| |||| ||||||    
T  13358101 ttttttcaaaatttatttggttaactatgtggaaaaatagtggtaacgcgcattttaattgtgtgaccatatttttcagcttctaaata 13358189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 26308643 - 26308741
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgg 99  Q
    |||||| |||| || |||||||||||| || || ||||||||||||||| ||| ||||||||| |||  |||||||||| ||| |||| ||||||||||    
T  26308643 ccactaattttccagaatttatttggttaagtaagtggaaaaatagtggtcacgcgcattttaattgcgtgaccacattattcagcttctaaatagtgg 26308741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 42481402 - 42481300
Alignment:
Q  5 tattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggacacg 104  Q
    |||||||||| |||||||||||| ||||| || |||||||| ||| |||   |||||||||||  |||||| ||||||| | ||||||||||||| ||||    
T  42481402 tattttttcagaatttatttggttaactaagtagaaaaataatggtcacgtacattttagttgtgtgaccatatttttcagtttttaaatagtggtcacg 42481303  T
Q  105 caa 107  Q
    |||    
T  42481302 caa 42481300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 27335402 - 27335479
Alignment:
Q  17 atttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaat 94  Q
    ||||||||||| ||||| ||||||||||||||| |||  | ||||||||||  |||||||||||||| |||| |||||    
T  27335402 atttatttggttaactaagtggaaaaatagtggtcacgtgtattttagttgtgtgaccacatttttcagcttctaaat 27335479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 31545491 - 31545423
Alignment:
Q  135 attaactgaaattttcgagagtaatacaaggatatgtacacattaaggatgcctaccaatctttattct 203  Q
    ||||||||||||||||||||||| ||||| |  || |||||||||| | || |||||||||||||||||    
T  31545491 attaactgaaattttcgagagtagtacaaagggatatacacattaaaggtgtctaccaatctttattct 31545423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 19624411 - 19624293
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    |||| |||||| || ||||||| |||| ||||| ||||||||||||||| |||  ||||||||||||  || |||||| |||  |||| |||||| |||     
T  19624411 ccacaatttttccagaatttatgtggttaactaagtggaaaaatagtggtcacgtgcattttagttgggtggccacatattttagcttataaata-tggt 19624313  T
Q  101 cacgcaactgaaaaaatatg 120  Q
    ||| |||||||| |||||||    
T  19624312 cacacaactgaagaaatatg 19624293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 11501375 - 11501310
Alignment:
Q  2 cactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttg 67  Q
    ||||||||||| | |||||||||||| |||||  |||||||||||||| ||| | |||||||||||    
T  11501375 cactatttttttaaaatttatttggttaactaattggaaaaatagtggtcacgcacattttagttg 11501310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 11509969 - 11509888
Alignment:
Q  41 aaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggacacgcaactgaaaaaatatggt 122  Q
    |||||| || ||| |||||||||||||  |||||||||||||| |||| ||||||  || ||||||| ||||||||| ||||    
T  11509969 aaataggggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaataaaggtcacgcaagtgaaaaaatgtggt 11509888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 34627304 - 34627419
Alignment:
Q  3 actattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacattttt-ctgcttttaaatagtggac 101  Q
    ||||||||||   |||||||||||| |||||  |||||||||| |||  ||| | ||||||||||  ||||||||||||| | | ||||||||||||  |    
T  34627304 actatttttttcgaatttatttggttaactaaatggaaaaataatggttacatgtattttagttgcgtgaccacatttttccgggttttaaatagtgtcc 34627403  T
Q  102 acgcaactgaaaaaat 117  Q
      ||||||||||||||    
T  34627404 ttgcaactgaaaaaat 34627419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 27365008 - 27365074
Alignment:
Q  17 atttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttc 83  Q
    ||||||||||| || || ||||||||||||||| |||||| ||||||| ||  |||| |||||||||    
T  27365008 atttatttggttaattaagtggaaaaatagtggtcacacgtattttagctgcgtgactacatttttc 27365074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 41571876 - 41571828
Alignment:
Q  74 cacatttttctgcttttaaatagtggacacgcaactgaaaaaatatggt 122  Q
    ||||||||||  |||||||||||||| |||| |||||||||||| ||||    
T  41571876 cacatttttcaacttttaaatagtggtcacgtaactgaaaaaatgtggt 41571828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 20556866 - 20556661
Alignment:
Q  7 ttttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggacacgca 106  Q
    |||||||| |||||||||||| ||||| ||||||||||| ||| ||| || ||||||||||  |||||||||||||| |||| |||||||||| ||| ||    
T  20556866 ttttttcagaatttatttggttaactaagtggaaaaatattggtcacgcgtattttagttgcgtgaccacatttttcagcttctaaatagtggtcacaca 20556767  T
Q  107 actgaaaaaatatggt-------accatattttttattaactgaaattttcgagagtaatacaaggatatgtacacattaaggatgcctaccaatcttta 199  Q
    ||||||||||||||||       ||||||| |||  ||||||||||||||||||||||| |||| || || |||||||||||| || ||||| |||||||    
T  20556766 actgaaaaaatatggtcacaccgaccatatatttggttaactgaaattttcgagagtaacacaaagagatatacacattaagggtgtctaccgatcttta 20556667  T
Q  200 ttctta 205  Q
    ||||||    
T  20556666 ttctta 20556661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 31303559 - 31303351
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    ||||||| ||| || |||||||||||| ||||| ||||||||||||||| ||| | |||||||||||  |||||||||||||| |||| ||||||||||     
T  31303559 ccactatgtttccagaatttatttggttaactaagtggaaaaatagtggtcacgcacattttagttgcatgaccacatttttcagcttctaaatagtggt 31303460  T
Q  101 cacgcaactgaaaaaatatggt-------accatattttttattaactgaaattttcgagagtaatacaaggatatgtacacattaaggatgcctaccaa 193  Q
    ||||||| ||||||||| ||||       ||||| | |||  || |||||||||||  ||||| ||||||    ||||||||||||||| || |||||||    
T  31303459 cacgcaattgaaaaaatgtggtcacgcagaccatgtatttggttgactgaaatttttcagagtgatacaaatggatgtacacattaagggtgtctaccaa 31303360  T
Q  194 tctttattc 202  Q
    |||||||||    
T  31303359 tctttattc 31303351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 21589729 - 21589608
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    ||||||||||| || || ||||||| | || || ||||||||||||||| |||||||||||||||||  |||||||||||||| |||| |||||||||      
T  21589729 ccactatttttccagaacttatttgattaattaagtggaaaaatagtggtcacacgcattttagttgcatgaccacatttttcagcttctaaatagtgat 21589630  T
Q  101 cacgcaactgaaaaaatatggt 122  Q
    ||| ||||||||||||||||||    
T  21589629 cacacaactgaaaaaatatggt 21589608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 21548558 - 21548351
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    ||||||||||| || |||||||||||| ||||| ||||||||| |||||  || ||||||  |||||  |||||||||||||| ||||||||||| |||     
T  21548558 ccactatttttccagaatttatttggttaactaagtggaaaaacagtggttacgcgcattcgagttgcgtgaccacatttttcagcttttaaatattggt 21548459  T
Q  101 cacgcaactgaaaaaatatgg-------taccatattttttattaactgaaattttcgagagtaatacaaggatatgtacacattaaggatgcctaccaa 193  Q
    ||| |||||||||||||||||       ||||||| |||| |||||||||||||||| |||||  ||||| ||  |||| | ||||| | || ||||| |    
T  21548458 cacacaactgaaaaaatatggtcacacataccata-ttttgattaactgaaattttcaagagtggtacaaagaagtgtatatattaaaggtgtctaccga 21548360  T
Q  194 tctttattc 202  Q
    |||||||||    
T  21548359 tctttattc 21548351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 18312932 - 18312723
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    |||||||||||  | |||||||| ||| ||||| ||||||||||||||| |||| ||||||||||||  ||| |||| ||||| |||| |||||||| |     
T  18312932 ccactatttttcaagaatttattaggttaactaagtggaaaaatagtggtcacatgcattttagttgcgtgagcaca-ttttcagcttctaaatagtagt 18312834  T
Q  101 cacgcaactgaaaaaatatggt-------accatattttttattaactgaaattttcgagagtaatacaaggatatgtacacattaaggatgcctaccaa 193  Q
     ||||||||||||| || ||||       ||||||| ||| ||||| ||||||||||||||||  ||||| |   | ||||| |||||| || |||||||    
T  18312833 gacgcaactgaaaatatgtggtcacagagaccatatatttgattaattgaaattttcgagagtggtacaaaggggtatacacgttaagggtgtctaccaa 18312734  T
Q  194 tctttattctt 204  Q
    |||||||||||    
T  18312733 tctttattctt 18312723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 4290932 - 4290812
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    |||||| ||||||| |||||||||||| ||||| ||||||||||||||| ||| | ||  |||||||  ||||||||||||||  ||| ||||||||||     
T  4290932 ccactagtttttcagaatttatttggttaactaagtggaaaaatagtggtcacgcaca-cttagttgcgtgaccacatttttcaacttctaaatagtggt 4290834  T
Q  101 cacgcaactgaaaaaatatggt 122  Q
    ||| ||||||||||||| ||||    
T  4290833 cactcaactgaaaaaatgtggt 4290812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 22740664 - 22740776
Alignment:
Q  3 actattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggaca 102  Q
    |||||||||||| |||||||||||| ||||| ||||||||||| ||  ||| |  ||||||||||  |||||| ||||||| ||||||||||| ||| ||    
T  22740664 actattttttcagaatttatttggttaactaagtggaaaaataatgatcacgcatattttagttgcgtgaccatatttttcagcttttaaata-tggtca 22740762  T
Q  103 cgcaactgaaaaaa 116  Q
    | ||||||||||||    
T  22740763 cacaactgaaaaaa 22740776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 28804993 - 28805089
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtg 98  Q
    ||||||| ||| ||||||||||||||| ||||| ||||||||||||||| | | |||||||| ||||  |||||||||||||| |||| |||||||||    
T  28804993 ccactatatttccataatttatttggttaactaagtggaaaaatagtggtc-cgcgcattttggttgtgtgaccacatttttcagcttctaaatagtg 28805089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 5083795 - 5084005
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    |||||||||||  | ||||||||| || ||| | || |||||||||||| ||| |||| ||||||||  |||||| |||||||  ||| ||||||||||     
T  5083795 ccactatttttctagaatttatttcgttaacaaagttgaaaaatagtggtcacccgca-tttagttgcgtgaccatatttttcaacttctaaatagtggt 5083893  T
Q  101 cacgcaactgaaaaaatatgg-------taccatattttttattaactgaaattttcgagagtaatacaaggatatgtacacattaaggatgcctaccaa 193  Q
    ||||||| ||||||||| |||       |||||||| ||| || || |||||||||||||| |||||||| |   |||| ||||||| | |   ||||||    
T  5083894 cacgcaattgaaaaaatgtggtcacacataccatatatttgatgaattgaaattttcgagaataatacaaaggggtgtatacattaaaggtatttaccaa 5083993  T
Q  194 tctttattctta 205  Q
    ||||||||||||    
T  5083994 tctttattctta 5084005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 202
Target Start/End: Complemental strand, 32964685 - 32964651
Alignment:
Q  168 atgtacacattaaggatgcctaccaatctttattc 202  Q
    |||||||||||||||||| ||||||||||||||||    
T  32964685 atgtacacattaaggatgtctaccaatctttattc 32964651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 38606831 - 38607041
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    ||||||| ||| || |||||||||||| ||||| ||||||||||||||| |||||||||||| ||||  |||||||||||||| |||| ||||||||||     
T  38606831 ccactatgtttccagaatttatttggttaactaagtggaaaaatagtggtcacacgcattttcgttgcgtgaccacatttttcagcttctaaatagtggt 38606930  T
Q  101 cacgcaactgaaaaaatatggt-------accatattttttattaactgaaattttcgagagtaatacaaggatatgtacacattaaggatgcctaccaa 193  Q
     |||||||||||||||| ||||       ||||||| | |  |||||||||||||| ||||||  ||||| |   ||||||||||||||||| |||||||    
T  38606931 aacgcaactgaaaaaatgtggtcacgcaaaccatatatgtagttaactgaaattttggagagttgtacaaaggggtgtacacattaaggatgtctaccaa 38607030  T
Q  194 tctttattctt 204  Q
    | |||||||||    
T  38607031 tatttattctt 38607041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 1251480 - 1251689
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    ||||||||||| ||||||||||||||| ||||| |||| |||||||||| | | | |||||||||| | ||| |||||||||| | |||||||||||||     
T  1251480 ccactatttttccataatttatttggttaactaagtgggaaaatagtggtcgcgcacattttagttca-tgatcacatttttcaggttttaaatagtggt 1251578  T
Q  101 cacgcaactgaaaaaatatggt-------accatattttttattaactgaaattttcgagagtaatacaaggatatgtacacattaaggatgcctaccaa 193  Q
    ||||||||||||||||| ||||       | ||||| |||  |||||||||||||||||||||  |||||     ||||||||||||||||| |||||||    
T  1251579 cacgcaactgaaaaaatgtggtctcacaaatcatatatttagttaactgaaattttcgagagtggtacaaatgggtgtacacattaaggatgtctaccaa 1251678  T
Q  194 tctttattctt 204  Q
    |||||||||||    
T  1251679 tctttattctt 1251689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 1240904 - 1241024
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    ||||||||||| ||||||||||||||| ||||| |||| |||||||||| ||| | |||||||||| | |||||||||||||| |||| ||||||||||     
T  1240904 ccactatttttccataatttatttggttaactaagtgggaaaatagtggtcacgcacattttagttca-tgaccacatttttcagcttctaaatagtggt 1241002  T
Q  101 cacgcaactgaaaaaatatggt 122  Q
    ||| ||||||||||||||||||    
T  1241003 cacacaactgaaaaaatatggt 1241024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 29367076 - 29367179
Alignment:
Q  19 ttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggacacgcaactgaaaaaata 118  Q
    ||||||||| ||||| ||||||||||||||| ||| |||||||||||||  |||||||||||||| ||||  ||||||||| ||| ||| ||||||||||    
T  29367076 ttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttcaaaatagtggtcacacaattgaaaaaata 29367175  T
Q  119 tggt 122  Q
    ||||    
T  29367176 tggt 29367179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 5573879 - 5573770
Alignment:
Q  8 tttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggacacgcaa 107  Q
    ||||||| |||||||||||| ||||| ||||||||||||||| |||  |||||||||||   ||||||||||||||  ||| |||||||||| |||||||    
T  5573879 tttttcaaaatttatttggttaactaagtggaaaaatagtggtcacgtgcattttagttccatgaccacatttttcaacttctaaatagtggtcacgcaa 5573780  T
Q  108 ctgaaaaaat 117  Q
     |||||||||    
T  5573779 ttgaaaaaat 5573770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 5321965 - 5322081
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    |||||||||||| | |||||||||||| ||||| ||||||||||||||| ||| |||||||||||||  ||| || ||||||| |||| |||||| ||      
T  5321965 ccactatttttttagaatttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgcgtgatcatatttttcagcttctaaataatgat 5322064  T
Q  101 cacgcaactgaaaaaat 117  Q
    ||||||| |||||||||    
T  5322065 cacgcaattgaaaaaat 5322081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 15714698 - 15714819
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    |||||||||||||  |||||||||||| ||||| ||||||||||||||| |||   ||||||||||   |||||| ||||||| ||||||||||||| |     
T  15714698 ccactattttttcgaaatttatttggttaactaagtggaaaaatagtggtcacggacattttagttacgtgaccatatttttcagcttttaaatagtagt 15714797  T
Q  101 cacgcaactgaaaaaatatggt 122  Q
    ||| || |||||||||| ||||    
T  15714798 cacacagctgaaaaaatgtggt 15714819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 202
Target Start/End: Complemental strand, 31596894 - 31596693
Alignment:
Q  7 ttttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggacacgca 106  Q
    ||||| ||||||||||||||| || || ||||||||||||||   |||||||||| |||||  ||||||||||||||  ||| ||||||||||  |||||    
T  31596894 tttttccataatttatttggttaattaagtggaaaaatagtgattacacgcattt-agttgtctgaccacatttttcatcttctaaatagtggtaacgca 31596796  T
Q  107 actgaaaaaatatgg-------taccatattttttattaactgaaattttcgagagtaatacaaggatatgtacacattaaggatgcctaccaatcttta 199  Q
    ||||||||||| |||       |||||||| ||| |||||||| ||||||  | |||  ||||| ||  |||||| ||||||  || |||||||||||||    
T  31596795 actgaaaaaatgtggtcacacataccatatatttgattaactgtaatttttcaaagtggtacaaagaggtgtacatattaagagtgtctaccaatcttta 31596696  T
Q  200 ttc 202  Q
    |||    
T  31596695 ttc 31596693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 26493347 - 26493455
Alignment:
Q  8 tttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggacacgcaa 107  Q
    ||||||| |||||||||| | |||||  |||||||||||| | ||| ||||||| |||||  |||||||||||||| |||| |||||||| |  || |||    
T  26493347 tttttcagaatttatttgattaactaaatggaaaaatagttgtcacgcgcattt-agttgcgtgaccacatttttcagcttctaaatagtagttacacaa 26493445  T
Q  108 ctgaaaaaat 117  Q
    ||||||||||    
T  26493446 ctgaaaaaat 26493455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 6809900 - 6809804
Alignment:
Q  3 actattttt-tcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtg 98  Q
    ||||||||| |||||||||||||||| || ||  |||||||||||||| |||| | |||||||| || | |||||||||||   |||||||||||||    
T  6809900 actatttttctcataatttatttggttaattaaatggaaaaatagtggtcacatgtattttagtcgagtaaccacattttttatcttttaaatagtg 6809804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 31273570 - 31273774
Alignment:
Q  6 attttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggacacgc 105  Q
    ||||||| | |||||||||||| ||||  ||| |||||||| |  |||  ||||||||| ||  |||||| ||||||| |||| ||||||| || |||||    
T  31273570 attttttaagaatttatttggttaacttagtgaaaaaatagcgttcacgtgcattttagctgcatgaccatatttttcagcttctaaataggggtcacgc 31273669  T
Q  106 aactgaaaaaatatgg-------taccatattttttattaactgaaattttcgagagtaatacaaggatatgtacacattaaggatgcctaccaatcttt 198  Q
    ||||||||| || |||        ||||||| ||| ||||| ||||||||||||||||  |||||  |  | |||||||||||  |  ||||||||||||    
T  31273670 aactgaaaacatgtggccacatagaccatatatttgattaattgaaattttcgagagtggtacaaaaaggtatacacattaagagtatctaccaatcttt 31273769  T
Q  199 attct 203  Q
    |||||    
T  31273770 attct 31273774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 15233318 - 15233241
Alignment:
Q  17 atttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaat 94  Q
    ||||||||||| || || ||| ||||||||||| ||  |||||||||||||  ||||||| ||||||  |||||||||    
T  15233318 atttatttggttaattaagtgaaaaaatagtggtcatgcgcattttagttgcgtgaccacgtttttcaacttttaaat 15233241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 32959631 - 32959550
Alignment:
Q  36 tggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggacacgcaactgaaaaaat 117  Q
    |||||||||||||| ||||| |||||||||||  |||||| ||||||  |||| | ||| |||| |||| || |||||||||    
T  32959631 tggaaaaatagtggtcacacacattttagttgtgtgaccatattttttagcttcttaatggtggtcacgtaattgaaaaaat 32959550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 33286263 - 33286202
Alignment:
Q  61 ttagttgattgaccacatttttctgcttttaaatagtggacacgcaactgaaaaaatatggt 122  Q
    |||||||  |||||||||||||| |||| |||| ||||| ||||||| ||||||||| ||||    
T  33286263 ttagttgcgtgaccacatttttcagcttctaaaaagtggtcacgcaattgaaaaaatgtggt 33286202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 200
Target Start/End: Complemental strand, 16583700 - 16583496
Alignment:
Q  3 actattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggaca 102  Q
    ||||||||  ||||||||||||||| || || ||||||||||||||| ||| |||||||||||||  ||| || ||||||| |||| |||||||||| ||    
T  16583700 actattttaccataatttatttggttaattaagtggaaaaatagtggtcacgcgcattttagttgcatgatcatatttttcagcttctaaatagtggtca 16583601  T
Q  103 cgcaactgaaaaaatatggt-------accatattttttattaactgaaattttcgagagtaatacaaggatatgtacacattaaggatgcctaccaatc 195  Q
    ||||||||||||||| ||||       ||||||| |||  |||||||||||||||||||||  ||||| |  |||||| |||||||| || |||||||||    
T  16583600 cgcaactgaaaaaatgtggtcacatcaaccatatatttggttaactgaaattttcgagagtggtacaaagggatgtacgcattaagggtgtctaccaatc 16583501  T
Q  196 tttat 200  Q
    |||||    
T  16583500 tttat 16583496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 33179762 - 33179970
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    |||||| ||||| | |||||||||| | ||||| ||||||||||||||| |||||||||||||||||  || |||||||||||   || ||||||||||     
T  33179762 ccactacttttttagaatttatttgattaactaagtggaaaaatagtggtcacacgcattttagttgtgtggccacatttttcactttctaaatagtggt 33179861  T
Q  101 cacgcaactgaaaaaatatgg-------taccatattttttattaactgaaattttcgagagtaatacaaggatatgtacacattaaggatgcctaccaa 193  Q
    |||||| ||||||| ||||||       |||||||| |||  |||| | |||||||||| |||  || || || || ||||||||||||||| |||||||    
T  33179862 cacgcagctgaaaagatatggtaacacataccatatatttagttaattaaaattttcgatagtggtataaagaaatatacacattaaggatgtctaccaa 33179961  T
Q  194 tctttattc 202  Q
    || ||||||    
T  33179962 tcattattc 33179970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 33249619 - 33249737
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    |||||| ||||||| |||||||||| | ||||| ||||||||||||||| |||||||||||||  ||  ||||||||||||||  ||| ||||||||||     
T  33249619 ccactactttttcaaaatttatttgattaactaggtggaaaaatagtggtcacacgcattttatgtgcgtgaccacatttttcaccttctaaatagtggt 33249718  T
Q  101 cacgcaactgaaaaaatat 119  Q
    |||||||||||||| ||||    
T  33249719 cacgcaactgaaaagatat 33249737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 9809174 - 9809059
Alignment:
Q  7 ttttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggacacgca 106  Q
    ||||| ||||| ||||||||| |||||  |||||||||||||| ||| ||||||| |||||  |||| ||||||||| |||| |||||||||| ||||||    
T  9809174 tttttccataaattatttggttaactaaatggaaaaatagtggtcacgcgcatttgagttgcgtgactacatttttcagcttctaaatagtggtcacgca 9809075  T
Q  107 actgaaaaaatatggt 122  Q
    ||||||||||| ||||    
T  9809074 actgaaaaaatgtggt 9809059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 1966836 - 1966950
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    |||||| |||| || |||||||||||| || || ||||||||||||||| ||| ||||||| |||||  |||||||||||||| |||| ||||||||||     
T  1966836 ccactagttttccagaatttatttggttaattaagtggaaaaatagtggtcacgcgcattt-agttgcgtgaccacatttttcagcttctaaatagtggt 1966934  T
Q  101 cacgcaactgaaaaaa 116  Q
    ||||||||| ||||||    
T  1966935 cacgcaactaaaaaaa 1966950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 9810860 - 9810744
Alignment:
Q  7 ttttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggacacgca 106  Q
    ||||||||||| ||||||||| |||||  ||||||||||| || ||| | ||||| |||||  |||| ||||||||  |||| |||||||||| ||||||    
T  9810860 ttttttcataaattatttggttaactaaatggaaaaatagaggtcacgcacatttgagttgcgtgactacattttttagcttctaaatagtggtcacgca 9810761  T
Q  107 actgaaaaaatatggta 123  Q
    ||||||||||| |||||    
T  9810760 actgaaaaaatgtggta 9810744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 8740796 - 8740908
Alignment:
Q  3 actattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggaca 102  Q
    |||| |||| |||||||||||| || ||||| || |||||||||||| ||| |||||||||| |   |||||||||||||| |||| |||||||||  ||    
T  8740796 actacttttccataatttatttagttaactaagtagaaaaatagtggtcacgcgcattttag-tacgtgaccacatttttcagcttctaaatagtgatca 8740894  T
Q  103 cgcaactgaaaaaa 116  Q
    ||||||||||||||    
T  8740895 cgcaactgaaaaaa 8740908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 2433811 - 2433702
Alignment:
Q  7 ttttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggacacgca 106  Q
    ||||||||||||||||||||| ||| | ||| ||||||||||| |||  |||||||  || || ||||||||||||| |||| |||||||||| ||  ||    
T  2433811 ttttttcataatttatttggttaacaaagtgaaaaaatagtggtcacgtgcattttttttcat-gaccacatttttcagcttctaaatagtggtcaaaca 2433713  T
Q  107 actgaaaaaat 117  Q
    |||||||||||    
T  2433712 actgaaaaaat 2433702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 19596888 - 19596773
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    ||||||| |||||| |||||||||||| ||||| ||||  ||||||| | ||  |||||||||||||  |||||||||||||| |||| |||||| |||     
T  19596888 ccactatgttttcagaatttatttggttaactaagtgggtaaatagtagtcatgcgcattttagttgcgtgaccacatttttcagcttctaaataatggt 19596789  T
Q  101 cacgcaactgaaaaaa 116  Q
     || || |||||||||    
T  19596788 tacacagctgaaaaaa 19596773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 42908674 - 42908560
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccaca-tttttctgcttttaaatagtgg 99  Q
    ||||||||||| || |||||||||||| ||||| | ||||| ||||||| ||| |||||||||||||  ||| |||| ||||||  ||||||||| ||||    
T  42908674 ccactatttttccagaatttatttggttaactaagaggaaacatagtggtcacgcgcattttagttgcgtgatcacattttttcaacttttaaat-gtgg 42908576  T
Q  100 acacgcaactgaaaaa 115  Q
     ||| |||||||||||    
T  42908575 tcacacaactgaaaaa 42908560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 35544425 - 35544538
Alignment:
Q  3 actattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggaca 102  Q
    ||||||| | || ||||||||| || || || ||||||||||||||  ||||||||||| |||||  |||||||||||||| |||| |||||||||| ||    
T  35544425 actatttatccaaaatttatttagttaattaagtggaaaaatagtgatcacacgcattt-agttgcgtgaccacatttttcagcttctaaatagtggtca 35544523  T
Q  103 cgcaactgaaaaaat 117  Q
      |||| ||||||||    
T  35544524 tacaacggaaaaaat 35544538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 55666841 - 55666942
Alignment:
Q  13 cataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggacacgcaactgaa 112  Q
    ||||||||||||| | ||||| ||||||||||||||| |||   ||||||||||   ||||||| |||||| |||| |||||| ||| ||||||||||||    
T  55666841 cataatttatttgcttaactaagtggaaaaatagtggtcacgaacattttagtt-cgtgaccacgtttttcagcttataaataatggtcacgcaactgaa 55666939  T
Q  113 aaa 115  Q
    |||    
T  55666940 aaa 55666942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 24669274 - 24669209
Alignment:
Q  17 atttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacattttt 82  Q
    ||||||||||| ||||| ||| ||||||||||| |||||| ||||||||||  |||||| ||||||    
T  24669274 atttatttggttaactaagtgaaaaaatagtggtcacacgaattttagttgcgtgaccatattttt 24669209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 17633359 - 17633426
Alignment:
Q  16 aatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttc 83  Q
    |||||||||||| ||||| ||  ||||||||||| ||| |||||||||||||  |||||| |||||||    
T  17633359 aatttatttggttaactaagttaaaaaatagtggtcacgcgcattttagttgcgtgaccatatttttc 17633426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 20874868 - 20874818
Alignment:
Q  72 accacatttttctgcttttaaatagtggacacgcaactgaaaaaatatggt 122  Q
    |||||||||||| |||| |||| ||||  ||||||||||||||||||||||    
T  20874868 accacatttttcagcttctaaaaagtgatcacgcaactgaaaaaatatggt 20874818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14351168 - 14351120
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtgg 49  Q
    ||||||||||  || |||||||||||| ||||| |||||||||||||||    
T  14351168 ccactattttgacaaaatttatttggttaactaagtggaaaaatagtgg 14351120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 35922838 - 35922722
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    |||||||||||||| |||||||||||| |||||  |||||||||||||| || ||||||||||||||  |||||||||||||| |||| ||||||||||     
T  35922838 ccactattttttcagaatttatttggttaactaaatggaaaaatagtggtcatacgcattttagttgcgtgaccacatttttcagcttctaaatagtggt 35922739  T
Q  101 cacgcaactgaaaaaat 117  Q
    |||||||||||||||||    
T  35922738 cacgcaactgaaaaaat 35922722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 117
Target Start/End: Complemental strand, 22169559 - 22169447
Alignment:
Q  5 tattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggacacg 104  Q
    |||||||||| |||||||||||| ||||| || |||||||||||| ||| |||||||||||||  ||||||||||||||  ||| |||||||||| ||||    
T  22169559 tattttttcaaaatttatttggttaactacgttgaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcaacttataaatagtggtcacg 22169460  T
Q  105 caactgaaaaaat 117  Q
    |||||||||||||    
T  22169459 caactgaaaaaat 22169447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 13312704 - 13312590
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||||||| | ||| |||||||||||||  |||||||||||||| |||| ||||||| ||     
T  13312704 ccactatttttccataatttatttggttaactaagtggaaaaatagttgccacgcgcattttagttgcgtgaccacatttttcagcttctaaatagcggt 13312605  T
Q  101 cacgcaactgaaaaa 115  Q
    ||| |||||||||||    
T  13312604 cacccaactgaaaaa 13312590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 33958983 - 33959099
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    |||| |||||| || |||||||||||||||||| |||||||||||||||  || || ||||||||||  |||||| ||||||| | || ||||||||||     
T  33958983 ccacaatttttccagaatttatttggtcaactaagtggaaaaatagtggttactcggattttagttgcgtgaccatatttttcagtttctaaatagtggt 33959082  T
Q  101 cacgcaactgaaaaaat 117  Q
    |||||| ||||||||||    
T  33959083 cacgcagctgaaaaaat 33959099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 150
Target Start/End: Original strand, 43461706 - 43461859
Alignment:
Q  3 actattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggaca 102  Q
    |||||||||||| ||||||||||||  |||| |||||||||||||||  ||  | ||||||||||  |||||  |||||||  ||| |||||||||| ||    
T  43461706 actattttttcagaatttatttggtttactaagtggaaaaatagtggttacgtgaattttagttgcgtgaccgtatttttcaacttctaaatagtggtca 43461805  T
Q  103 cgcaactgaaaaaatatggt------accatattttttattaactgaaattttc 150  Q
    | ||||||||||||||||||      ||||||| ||| ||||||||||||||||    
T  43461806 cacaactgaaaaaatatggtccaaagaccatatatttgattaactgaaattttc 43461859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 42034862 - 42034749
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    |||||| |||| || |||||||||||| ||||| ||||||||||||||| |||  ||||||||||||  |||||||||||||| |||| | |||||  |     
T  42034862 ccactagttttccaaaatttatttggttaactaagtggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttct-aataggagt 42034764  T
Q  101 cacgcaactgaaaaa 115  Q
    |||||||||||||||    
T  42034763 cacgcaactgaaaaa 42034749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 19621477 - 19621557
Alignment:
Q  2 cactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacattttt 82  Q
    |||||||||| || |||||||||||| ||||| ||||||||||||||| ||| | |||||||||||  ||||||| |||||    
T  19621477 cactatttttccagaatttatttggttaactaagtggaaaaatagtggtcacgcacattttagttgcgtgaccacgttttt 19621557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 43262708 - 43262772
Alignment:
Q  20 tatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttct 84  Q
    |||||||| ||||| ||||||||||||||| ||| |||||||||||||  |||||||||||||||    
T  43262708 tatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgtgaccacatttttct 43262772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 30704398 - 30704476
Alignment:
Q  17 atttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccaca-tttttctgcttttaaat 94  Q
    ||||||||||| ||||| ||||||||||||||| ||| |||||||||||||   ||||||| |||||| ||||||||||    
T  30704398 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 30704476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 38521986 - 38522091
Alignment:
Q  16 aatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggacacgcaactgaaaaa 115  Q
    ||||||||| || ||||| ||| ||||||||||| ||| ||||||||| | |  |||||||||||||| |||| |||||||||| || |||| |||||||    
T  38521986 aatttatttagttaactaagtgtaaaaatagtggtcacgcgcatttta-tcgcgtgaccacatttttcagcttctaaatagtggtcatgcaattgaaaaa 38522084  T
Q  116 atatggt 122  Q
    || ||||    
T  38522085 atgtggt 38522091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 201
Target Start/End: Complemental strand, 35922686 - 35922607
Alignment:
Q  122 taccatattttttattaactgaaattttcgagagtaatacaaggatatgtacacattaaggatgcctaccaatctttatt 201  Q
    |||||||| ||| |||||||||||||||  ||||| |||||| |  ||||||||||||||  || ||||| |||||||||    
T  35922686 taccatatatttgattaactgaaatttttcagagtgatacaaagggatgtacacattaagtgtgtctaccgatctttatt 35922607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 122
Target Start/End: Original strand, 36169394 - 36169457
Alignment:
Q  59 ttttagttgattgaccacatttttctgcttttaaatagtggacacgcaactgaaaaaatatggt 122  Q
    |||||||||  |||||| ||||||| |||| |||||||||| ||||||||||||| ||| ||||    
T  36169394 ttttagttgcgtgaccatatttttcagcttctaaatagtggtcacgcaactgaaagaatgtggt 36169457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 2477360 - 2477302
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcat 59  Q
    ||||||||||| || |||||||||||| ||||| || |||||||||||| ||| |||||    
T  2477360 ccactatttttacagaatttatttggttaactaagtcgaaaaatagtggccacgcgcat 2477302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 33815025 - 33815140
Alignment:
Q  7 ttttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggacacgca 106  Q
    |||||||| |||||||||||| ||||| |||||||||| |||| ||| |||||||||||||  |||||||||||||| |||| |||||||||| ||||||    
T  33815025 ttttttcagaatttatttggttaactaagtggaaaaatggtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgca 33815124  T
Q  107 actgaaaaaatatggt 122  Q
    ||||||||||| ||||    
T  33815125 actgaaaaaatgtggt 33815140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 10304703 - 10304824
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    ||||| ||||| || |||||||||||| ||||| ||| ||||||||||| ||| |||||||||||||  |||||  |||||||||||| |||||||||      
T  10304703 ccactttttttccagaatttatttggttaactaagtgaaaaaatagtggtcacgcgcattttagttgcgtgaccgtatttttctgcttctaaatagtgat 10304802  T
Q  101 cacgcaactgaaaaaatatggt 122  Q
    ||||||||||||||||| ||||    
T  10304803 cacgcaactgaaaaaatgtggt 10304824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 3222522 - 3222416
Alignment:
Q  16 aatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggacacgcaactgaaaaa 115  Q
    |||||||||||| ||||| ||||||||||||||| |||   |||||||||||  ||||| |||||||| || |||||||||||| |||||||||||||||    
T  3222522 aatttatttggttaactaagtggaaaaatagtggtcacgtacattttagttgcgtgaccgcatttttcagcatttaaatagtggtcacgcaactgaaaaa 3222423  T
Q  116 atatggt 122  Q
    || ||||    
T  3222422 atgtggt 3222416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 138718 - 138816
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgg 99  Q
    |||||||||||||| ||||||||||||  |||| ||||||||||||||| | | | || ||||||||  |||||||||||||| |||| ||||||||||    
T  138718 ccactattttttcagaatttatttggttgactaagtggaaaaatagtggtcgcgcacaatttagttgcgtgaccacatttttcagcttctaaatagtgg 138816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 146739 - 146837
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgg 99  Q
    |||||||||||||| ||||||||||||  |||| ||||||||||||||| | | | || ||||||||  |||||||||||||| |||| ||||||||||    
T  146739 ccactattttttcagaatttatttggttgactaagtggaaaaatagtggtcgcgcacaatttagttgcgtgaccacatttttcagcttctaaatagtgg 146837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 2835068 - 2834974
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaata 95  Q
    ||||||||||| |||||||||||| || | ||| ||||||||||| ||| ||| || ||||||||||  |||||| ||||||| |||||||||||    
T  2835068 ccactatttttccataatttatttagttagctaagtggaaaaataatggtcacgcgtattttagttgcatgaccatatttttcagcttttaaata 2834974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 22608466 - 22608352
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    |||||| ||||||| || ||||||| | |||||  |  ||||||||||| ||  | |||||||||||  |||||||||||||| |||| ||||||||||     
T  22608466 ccactaatttttcagaaattatttgattaactaattcaaaaaatagtggtcatgcacattttagttgcatgaccacatttttcagcttctaaatagtggt 22608367  T
Q  101 cacgcaactgaaaaa 115  Q
    |||||||||||||||    
T  22608366 cacgcaactgaaaaa 22608352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 3620763 - 3620860
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtg 98  Q
    |||||||||||||| |||||||||||| ||||| ||| ||||||||||| ||||   ||||||||||  ||| ||||||||||  ||| |||||||||    
T  3620763 ccactattttttcagaatttatttggttaactaagtgaaaaaatagtggtcacatatattttagttgtgtgatcacatttttcaacttctaaatagtg 3620860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2430610 - 2430658
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtgg 49  Q
    |||||||||||||| |||||||||||| ||||| |||||||||||||||    
T  2430610 ccactattttttcagaatttatttggttaactaagtggaaaaatagtgg 2430658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 9068511 - 9068414
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgg 99  Q
    ||||||||||| || || ||||||| | | ||| |||||||||||||   ||| |||||||||| ||  |||||||||||||| |||||||||||||||    
T  9068511 ccactatttttccagaacttatttgttta-ctaagtggaaaaatagtaatcacgcgcattttagatgtgtgaccacatttttcagcttttaaatagtgg 9068414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 23595250 - 23595091
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    |||||| ||||||| ||||||||| || ||||| ||||||||||||||| ||| ||        |||  |||||||||||||| |||| |||||||| |     
T  23595250 ccactaatttttcagaatttattttgttaactaagtggaaaaatagtggccacgcg--------ttg--tgaccacatttttcagcttctaaatagttgt 23595161  T
Q  101 cacgcaactgaaaaaatatggt-------accatattttttattaactgaaattttcgagagtaatacaa 163  Q
    ||| ||||| ||||||||||||       ||||||| |||  |||||| |||||||||||||| ||||||    
T  23595160 cacacaactaaaaaaatatggtcacacagaccatatatttagttaacttaaattttcgagagtgatacaa 23595091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 9474718 - 9474673
Alignment:
Q  18 tttatttggtcaactatgtggaaaaatagtggacacacgcatttta 63  Q
    |||||||||| ||||| ||| ||||||||||| |||||||||||||    
T  9474718 tttatttggttaactaagtgaaaaaatagtggtcacacgcatttta 9474673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 1400777 - 1400891
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||||||||  ||| |||||||| ||||  |||||||||||||| |||| ||||||||||     
T  1400777 ccactatttttccataatttatttggttaactaagtggaaaaatagtgatcacgcgcatttttgttgtgtgaccacatttttcagcttctaaatagtggt 1400876  T
Q  101 cacgcaactgaaaaa 115  Q
    |||||||||||||||    
T  1400877 cacgcaactgaaaaa 1400891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 30906054 - 30906168
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    ||||||| ||| ||||||||||||| | ||||| ||||||||||||||| ||| |||||||||||||  |||||||||||||| || ||||||||||||     
T  30906054 ccactatgtttccataatttatttgcttaactaagtggaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcatttaaatagtggt 30906153  T
Q  101 cacgcaactgaaaaa 115  Q
    |||| ||||||||||    
T  30906154 cacgaaactgaaaaa 30906168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 43900631 - 43900518
Alignment:
Q  4 ctattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggacac 103  Q
    ||||||||||| |||||||||||| |||||  | |||||||||||| |||  ||||||||||||  |||||||||||||| |||| |||||||||| |||    
T  43900631 ctattttttcagaatttatttggttaactaaatagaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcac 43900532  T
Q  104 gcaactgaaaaaat 117  Q
     |||||||||||||    
T  43900531 acaactgaaaaaat 43900518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 45306068 - 45305952
Alignment:
Q  5 tattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggacacg 104  Q
    |||||||| | |||||||| ||| ||||| ||||||||||||||| ||| | |||||||||||  || ||||||||||| |||||||||| |||| ||||    
T  45306068 tatttttttagaatttattcggttaactaagtggaaaaatagtggtcacgcacattttagttgcgtggccacatttttcagcttttaaat-gtggtcacg 45305970  T
Q  105 caactgaaaaaatatggt 122  Q
    ||||||||||||||||||    
T  45305969 caactgaaaaaatatggt 45305952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 28527326 - 28527441
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    ||||||||||| || |||||||||||| |||||  |||||||||||||| ||||||||| ||||||   |||| ||||||| | |||| |||||  |||     
T  28527326 ccactatttttccagaatttatttggttaactaattggaaaaatagtggtcacacgcatgttagtt-cgtgacaacattttccagcttctaaattatggt 28527424  T
Q  101 cacgcaactgaaaaaat 117  Q
    ||||||||| |||||||    
T  28527425 cacgcaactaaaaaaat 28527441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 33667421 - 33667339
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttc 83  Q
    |||||||||||||| ||| |||||||| ||||| |||||||||||||||  || | ||||||| |||  ||||||||||||||    
T  33667421 ccactattttttcagaatatatttggttaactaagtggaaaaatagtggttacgcacattttaattgcgtgaccacatttttc 33667339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 29677088 - 29677202
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    |||||||||||||| |||||||||||| ||||| ||||||||||||||| ||| | |||||||||||  |||||||||||||| |||| ||||||||||     
T  29677088 ccactattttttcagaatttatttggttaactaagtggaaaaatagtggtcacgcacattttagttgcgtgaccacatttttcagcttctaaatagtggt 29677187  T
Q  101 cacgcaactgaaaaa 115  Q
    ||| |||||||||||    
T  29677188 cactcaactgaaaaa 29677202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 42604323 - 42604203
Alignment:
Q  2 cactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggac 101  Q
    ||||||||||||| ||||||||| || ||||| ||||||||||||||| ||| |||||||||||||  |||||| | ||||  |||| ||||||||||      
T  42604323 cactattttttcagaatttatttcgttaactaagtggaaaaatagtggtcacgcgcattttagttgtatgaccatacttttaagcttctaaatagtggtg 42604224  T
Q  102 acgcaactgaaaaaatatggt 122  Q
    | |||||||||||||| ||||    
T  42604223 atgcaactgaaaaaatgtggt 42604203  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 29167813 - 29167928
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    |||||| ||||||  |||||||||||| ||||| ||||||||||||||| ||  ||||||||| |||  |||||| ||||||  |||| ||||||||||     
T  29167813 ccactagtttttcggaatttatttggttaactaagtggaaaaatagtggtcatgcgcatttta-ttgcgtgaccatattttttagcttctaaatagtggt 29167911  T
Q  101 cacgcaactgaaaaaat 117  Q
    |||||||||||||||||    
T  29167912 cacgcaactgaaaaaat 29167928  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 25238580 - 25238467
Alignment:
Q  3 actattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggaca 102  Q
    |||| ||||||| |||||||||||| ||||| |||||||||||||||  || | ||||||| ||   |||||||||||||  |||| |||||||||| ||    
T  25238580 actagtttttcagaatttatttggttaactaagtggaaaaatagtggttacgcacatttta-ttacgtgaccacattttttagcttctaaatagtggtca 25238482  T
Q  103 cgcaactgaaaaaat 117  Q
    |||||||||||||||    
T  25238481 cgcaactgaaaaaat 25238467  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 34490287 - 34490178
Alignment:
Q  7 ttttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggacacgca 106  Q
    |||||||| |||||||||||| |||||  | |||||||||||| ||  ||||||||| |||  |||||||||||||  |||| |||||||||| ||  ||    
T  34490287 ttttttcagaatttatttggttaactaactagaaaaatagtggtcatgcgcatttta-ttgcatgaccacattttttagcttctaaatagtggtcataca 34490189  T
Q  107 actgaaaaaat 117  Q
    |||||||||||    
T  34490188 actgaaaaaat 34490178  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 38952013 - 38951896
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccaca--tttttctgcttttaaatagtg 98  Q
    ||||||||| | || |||||||||||| ||||| || |||||||||||| || ||||||||||||||  |||| | |  |||||| | || |||||||||    
T  38952013 ccactatttctccaaaatttatttggttaactaagtagaaaaatagtggtcagacgcattttagttgcgtgactatatttttttcagtttctaaatagtg 38951914  T
Q  99 gacacgcaactgaaaaaa 116  Q
    | |||||| |||||||||    
T  38951913 gtcacgcagctgaaaaaa 38951896  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 9468199 - 9468094
Alignment:
Q  17 atttatttggtcaactatgtgg-aaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggacacgcaactgaaaaa 115  Q
    ||||||||||| ||||| |||| ||||||||| | ||||  |||||||||||  ||| |||||||| | ||||||||||| ||| ||  |||||||||||    
T  9468199 atttatttggttaactaagtggcaaaaatagtagtcacatacattttagttgtgtgatcacattttacagcttttaaata-tggtcagacaactgaaaaa 9468101  T
Q  116 atatggt 122  Q
    |||||||    
T  9468100 atatggt 9468094  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 34364333 - 34364224
Alignment:
Q  5 tattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggacacg 104  Q
    ||||||| || ||||| |||||| ||||| ||| |||||| |||| |||   |||||||||||  ||||||||| |||| |||| |||||| ||| ||||    
T  34364333 tatttttccagaatttttttggttaactaagtgaaaaaattgtggtcacgttcattttagttgtgtgaccacatgtttcagcttctaaata-tggccacg 34364235  T
Q  105 caactgaaaaa 115  Q
    |||||||||||    
T  34364234 caactgaaaaa 34364224  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 2996101 - 2996025
Alignment:
Q  18 tttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaat 94  Q
    |||||||||| ||||| | |||||||||| || ||| ||||||||| |||  |||||||||||||| |||| |||||    
T  2996101 tttatttggttaactaagcggaaaaatagcggccacgcgcattttatttgcgtgaccacatttttcagcttctaaat 2996025  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 5831638 - 5831573
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagtt 66  Q
    |||||| |||| || |||||||||||| ||||| |||||||||| ||||  | |||||||||||||    
T  5831638 ccactaattttccagaatttatttggttaactaagtggaaaaattgtggtaatacgcattttagtt 5831573  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2570014 - 2569966
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtgg 49  Q
    |||||||||||  | |||||||||||| ||||| |||||||||||||||    
T  2570014 ccactatttttctagaatttatttggttaactaagtggaaaaatagtgg 2569966  T

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Target: scaffold1126 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 212 - 326
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    |||||| ||||||| || ||||||||  || || ||||||||||||||| ||  |||||||||||||  |||||||||||||| |||| ||||||||||     
T  212 ccactaatttttcaaaaattatttggataagtaagtggaaaaatagtggtcatgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggt 311  T
Q  101 cacgcaactgaaaaa 115  Q
    |||||||||||||||    
T  312 cacgcaactgaaaaa 326  T

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Target: scaffold0251 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 201
Target Start/End: Original strand, 10622 - 10825
Alignment:
Q  5 tattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtggacacg 104  Q
    |||||||| | |||||||||||| ||||| ||||||||||| ||| |||  | ||||||||||  |||||||||||||    ||||||||||||| || |    
T  10622 tattttttgagaatttatttggttaactaagtggaaaaataatggtcacgggtattttagttgcgtgaccacattttttattttttaaatagtggtcatg 10721  T
Q  105 caactgaaaaaatatggt-------accatattttttattaactgaaattttcgagagtaatacaaggatatgtacacattaaggatgcctaccaatctt 197  Q
    ||||| ||||||||| ||       ||||||| |||  |||| |||||||||| |||||  ||||| |  ||||||| ||||||||||  |||| |||||    
T  10722 caacttaaaaaatatagtcacctagaccatatatttggttaattgaaattttctagagtggtacaaaggaatgtacatattaaggatgtttacctatctt 10821  T
Q  198 tatt 201  Q
    ||||    
T  10822 tatt 10825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 24024 - 24139
Alignment:
Q  1 ccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaatagtgga 100  Q
    |||||| ||||||| |||||||||||| || || ||||||||||||||| ||| |||||||||  ||  | |||||||||||  |||| ||||||||||     
T  24024 ccactagtttttcagaatttatttggtaaaataagtggaaaaatagtggtcacgcgcatttta-atgcgtaaccacattttttagcttctaaatagtggt 24122  T
Q  101 cacgcaactgaaaaaat 117  Q
    || ||||||||||||||    
T  24123 catgcaactgaaaaaat 24139  T

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Target: scaffold0126 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 21552 - 21604
Alignment:
Q  70 tgaccacatttttctgcttttaaatagtggacacgcaactgaaaaaatatggt 122  Q
    |||||||||||||| |||| || ||||||| ||||||||||||||||| ||||    
T  21552 tgaccacatttttcagcttctatatagtggtcacgcaactgaaaaaatgtggt 21604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 87112 - 87046
Alignment:
Q  17 atttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttc 83  Q
    ||||||||||| ||||| || |||||||||||| |||  | ||||||||||  ||||||||||||||    
T  87112 atttatttggttaactaagtagaaaaatagtggtcacgtgtattttagttgcgtgaccacatttttc 87046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 112235 - 112158
Alignment:
Q  17 atttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttctgcttttaaat 94  Q
    |||||||| || ||||| ||||||||||||||| |||  |||||||| |||  ||||||| |||||| |||| |||||    
T  112235 atttatttagttaactaagtggaaaaatagtggtcacgtgcattttaattgcgtgaccacgtttttcagcttctaaat 112158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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