View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2568_low_69 (Length: 233)
Name: NF2568_low_69
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_low_69 |
 | |
|
| [»] scaffold0127 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 824640 - 824410
Alignment:
| Q |
1 |
cctctctctagcttaagcaccgttgttcctcccttctatccaaaccagtcggccagatgtagatctctggcagtggtggtgcgacgagacttcgtctccg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
824640 |
cctctctctagcttaagcaccgttgttcctcccttctatccaaaccagtcggccagatgtagatctctggcagtggtggtgcgacgagacttcgtctccg |
824541 |
T |
|
| Q |
101 |
caccaccttcttcgtccccctcttgggttgttctccaaatgcgcgtttttctgcattttttccggtccatttcttgctcgcgttctctccgatctgttct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
824540 |
caccaccttcttcgtccccctcttgggttgttctccaaatgcgtgtttttctgcattttctccggtccatttcttgctcgcgttctctccgatctgttct |
824441 |
T |
|
| Q |
201 |
agatttgttttattcatggattgcggtggtg |
231 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |
|
|
| T |
824440 |
agatttgttttattcatggattgaggtggtg |
824410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 7393272 - 7393210
Alignment:
| Q |
45 |
ccagtcggccagatgtagatctctggcagtggtggtgcgacgagacttcgtctccgcaccacc |
107 |
Q |
| |
|
||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7393272 |
ccagtcgtccagatgtagatctatggtcgtggtggtgcgacgagactacgtctccgcaccacc |
7393210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 7872966 - 7873023
Alignment:
| Q |
55 |
agatgtagatctctggcagtggtggtgcgacgagacttcgtctccgcaccaccttcttc |
113 |
Q |
| |
|
||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7872966 |
agatgtagatc-ctagcagcggtggtgcgacgagacttcgtctccgcaccaccttcttc |
7873023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 21872117 - 21872149
Alignment:
| Q |
73 |
gtggtggtgcgacgagacttcgtctccgcacca |
105 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
21872117 |
gtggtggtgcgacgagactacgtctccgcacca |
21872149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 13033526 - 13033461
Alignment:
| Q |
48 |
gtcggccagatgtagatctctggcagtggtggtgcgacgagacttcgtctccgcaccaccttcttc |
113 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| |||||||||| |||||||||||||| ||||| |
|
|
| T |
13033526 |
gtcggccagatgtagatctcagtaagtggtggtacgacgagactaagtctccgcaccaccgtcttc |
13033461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 5745773 - 5745814
Alignment:
| Q |
72 |
agtggtggtgcgacgagacttcgtctccgcaccaccttcttc |
113 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
5745773 |
agtggtgatgcgacgagactatgtctccgcaccaccttcttc |
5745814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 113
Target Start/End: Original strand, 3475858 - 3475901
Alignment:
| Q |
70 |
gcagtggtggtgcgacgagacttcgtctccgcaccaccttcttc |
113 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
3475858 |
gcagcggtggtgcgacgatacttcatctccgcaccaccttcttc |
3475901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 22102 - 22060
Alignment:
| Q |
71 |
cagtggtggtgcgacgagacttcgtctccgcaccaccttcttc |
113 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
22102 |
cagtggtggtgcgacgagactatgtctctgcaccaccttcttc |
22060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 13455289 - 13455253
Alignment:
| Q |
73 |
gtggtggtgcgacgagacttcgtctccgcaccacctt |
109 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
13455289 |
gtggtggtgcgacgagactacgtgtccgcaccacctt |
13455253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University