View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2568_low_7 (Length: 597)
Name: NF2568_low_7
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 17 - 588
Target Start/End: Complemental strand, 825213 - 824642
Alignment:
| Q |
17 |
agatgtgtggtctacttttcctcatcactcttctacagctacagatgattgaatttaactaattcaccaatttgacctttcatggttttctgttgcaatt |
116 |
Q |
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| T |
825213 |
agatgtgtggtctacttttcctcatcactcttctacagctacagatgattaaatttaactaattcaccaatttgacctttcatggttttctgttgcaatt |
825114 |
T |
|
| Q |
117 |
atttttgtggtgtttgagcaaatgaatagagctacagggatatcgccaattacactacatacccatttttgaatcatccactcattctgtagtttattac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
825113 |
atttttgtggtgtttgagcaaatgaatagagctacagggatatcaccaattacactacatacccatttttgaatcgtccactcattctgtagtttattac |
825014 |
T |
|
| Q |
217 |
acaactttgacaagtttgtggtttttcccaattgctttagtgtaggaacttacaagtgcacatgctagtcctagctgctatttggcaactcaacaattct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
825013 |
acaactttgacaagtttgtggtttttcccaattgctttagtgtaggaacttacaagtgcacatgctagtcctagctgctatttggcaactcaacaattct |
824914 |
T |
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| Q |
317 |
taaaatcatattnnnnnnnnnnnnnnnnnnnnnnnnattgtggatgtgttgcatggggttgtgtcatgaagctcaagccaaaccactgatttcataccac |
416 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
824913 |
taaaatcatattgttttttgtttgtttttagtttttattgtggatgtgttgcatggggttgtgtcatgaagctcaagccaaaccactgatttcataccac |
824814 |
T |
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| Q |
417 |
tcttcatagaatttgaaatcaggtttatgaggcctacaactttacgtgtgcacccccatatgatttgtccaagggttctttcaagttttgagtttgtaac |
516 |
Q |
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| T |
824813 |
tcttcatagaatttgaaatcaggtttatgaggcctacaactttacgtgtgcacccccatatgatctgtccaagggttctttcgagttttgagtttgtaac |
824714 |
T |
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| Q |
517 |
agataggtcctttaaattgtttgcaagattacagttcagttaacttttctgtctctaaaatctttttctctg |
588 |
Q |
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| T |
824713 |
agataggtcctttaaattatttgcaagattacaattcagttaacttttctgtctctaaaatctttttctctg |
824642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 936748 - 936678
Alignment:
| Q |
17 |
agatgtgtggtctacttttcctcatcactcttctacagctacagatgattgaatttaactaattcaccaat |
87 |
Q |
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|||||||||||||||||||||||| ||||| |||||| | |||| ||||||||| ||| |||||| |||| |
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| T |
936748 |
agatgtgtggtctacttttcctcaccactcctctacaacagcagaagattgaattgaacaaattcatcaat |
936678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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