View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2568_low_70 (Length: 230)
Name: NF2568_low_70
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_low_70 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 31099968 - 31099774
Alignment:
| Q |
18 |
aaatactgaagaacaagtgaggtcagcttacactccgctggtatcggagcatcaaggtcgattcccaattgttctgcaatacacttatcatgatcatgct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31099968 |
aaatactgaagaacaagtgaggtcagcttacactccgctggtatcggagcatcaaggtcgattcccaattgttctgcaatacacttatcatgatcatgct |
31099869 |
T |
|
| Q |
118 |
caagccaaggtacaaagccttcaggtaagggcttactaggattccaaggttcatcatcttcagatttaagtggtgttttgcttgtttcaattcct |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31099868 |
caagccaaggtacaaagccttcaggtaagggcttactaggattccaaggttcatcatcttcagatttaagtggtgttttgcttgtttcaattcct |
31099774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 31141383 - 31141577
Alignment:
| Q |
18 |
aaatactgaagaacaagtgaggtcagcttacactccgctggtatcggagcatcaaggtcgattcccaattgttctgcaatacacttatcatgatcatgct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31141383 |
aaatactgaagaacaagtgaggtcagcttacactccgctggtatcggagcatcaaggtcgattcccaattgttctgcaatacacttatcatgatcatgct |
31141482 |
T |
|
| Q |
118 |
caagccaaggtacaaagccttcaggtaagggcttactaggattccaaggttcatcatcttcagatttaagtggtgttttgcttgtttcaattcct |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31141483 |
caagccaaggtacaaagccttcaggtaagggcttactaggattccaaggttcatcatcttcagatttaagtggtgttttgcttgtttcaattcct |
31141577 |
T |
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