View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2568_low_71 (Length: 227)
Name: NF2568_low_71
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_low_71 |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 85 - 216
Target Start/End: Original strand, 10240810 - 10240941
Alignment:
| Q |
85 |
aaattacattgtgggtttatccaatgtcagattcagcttacaaaaccattttaatttcttcaattttaattatatattatttcatagacataggatacat |
184 |
Q |
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| T |
10240810 |
aaattacattgtgggtttatccaatgtcagattcagcttacaaaaccattttaatttcttcaattttaattatatattatttcatagacataggatacat |
10240909 |
T |
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| Q |
185 |
attcatatttattcccgacaaccatggccttt |
216 |
Q |
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| T |
10240910 |
attcatatttattcccgacaaccatggccttt |
10240941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 10271044 - 10271092
Alignment:
| Q |
99 |
gtttatccaatgtcagattcagcttacaaaaccattttaatttcttcaa |
147 |
Q |
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| T |
10271044 |
gtttatccaatgccatattcagcttacaaaaccattttcatttcttcaa |
10271092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 10240688 - 10240737
Alignment:
| Q |
1 |
tcgtgccatatagcaccgcacnnnnnnngttattattttgcgaaagagaa |
50 |
Q |
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| T |
10240688 |
tcgtgccatatagcaccgcactttttttgttattattttgcgaaagagaa |
10240737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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