View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2568_low_76 (Length: 202)

Name: NF2568_low_76
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2568_low_76
NF2568_low_76
[»] chr6 (4 HSPs)
chr6 (13-202)||(15311307-15311497)
chr6 (13-202)||(15316601-15316791)
chr6 (16-142)||(19232600-19232727)
chr6 (58-94)||(19227264-19227300)
[»] chr3 (6 HSPs)
chr3 (14-142)||(46908973-46909102)
chr3 (48-125)||(50543961-50544038)
chr3 (81-144)||(27925366-27925429)
chr3 (48-125)||(24124164-24124241)
chr3 (53-125)||(23818322-23818394)
chr3 (53-125)||(49500654-49500726)
[»] chr1 (4 HSPs)
chr1 (16-142)||(7397018-7397145)
chr1 (81-125)||(28098284-28098328)
chr1 (20-125)||(21335545-21335651)
chr1 (54-100)||(26720445-26720491)
[»] chr7 (6 HSPs)
chr7 (16-125)||(4076982-4077092)
chr7 (30-97)||(27941845-27941913)
chr7 (81-123)||(44784879-44784921)
chr7 (58-94)||(17804696-17804732)
chr7 (58-94)||(34518958-34518994)
chr7 (58-94)||(45987800-45987836)
[»] chr8 (2 HSPs)
chr8 (14-125)||(11155223-11155335)
chr8 (81-125)||(36156930-36156974)
[»] chr4 (4 HSPs)
chr4 (16-125)||(18935375-18935485)
chr4 (57-97)||(10563660-10563700)
chr4 (58-94)||(19644741-19644777)
chr4 (57-97)||(53779794-53779834)
[»] scaffold0179 (1 HSPs)
scaffold0179 (54-100)||(7274-7320)
[»] chr5 (3 HSPs)
chr5 (16-125)||(40090046-40090156)
chr5 (81-126)||(20591910-20591955)
chr5 (58-94)||(22095604-22095640)
[»] scaffold0108 (1 HSPs)
scaffold0108 (58-94)||(10659-10695)


Alignment Details
Target: chr6 (Bit Score: 171; Significance: 5e-92; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 15311307 - 15311497
Alignment:
13 agcataggagttacgccattattaaacagcctatt-ttacactcattccataaaacccaagcacagagaagccaaataagctgaaggaacgatcgcgttg 111  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
15311307 agcataggagttacaccattattaaacagcctattattacactcattccataaaactcaagcacagagaagccaaataagctgaaggaacgaccgcgttg 15311406  T
112 ctttgccaccacctattgaatagacaaactgaatttttaaatcttattctaaggtttccaccattgaagagaagtattgaatcttatacta 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
15311407 ctttgccaccacctattgaatagacaaactgaatttttaaatcttattctaaggtttccaccattgaagagaagtattgaatcttatacta 15311497  T

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Target: chr6; HSP #2
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 15316601 - 15316791
Alignment:
13 agcataggagttacgccattattaaacagcctatt-ttacactcattccataaaacccaagcacagagaagccaaataagctgaaggaacgatcgcgttg 111  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
15316601 agcataggagttacaccattattaaacagcctattattacactcattccataaaactcaagcacagagaagccaaataagctgaaggaacgaccgcgttg 15316700  T
112 ctttgccaccacctattgaatagacaaactgaatttttaaatcttattctaaggtttccaccattgaagagaagtattgaatcttatacta 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
15316701 ctttgccaccacctattgaatagacaaactgaatttttaaatcttattctaaggtttccaccattgaagagaagtattgaatcttatacta 15316791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 19232600 - 19232727
Alignment:
16 ataggagttacgccattattaaacagcctatt-ttacactcattccataaaacccaagcacagagaagccaaataagctgaaggaacgatcgcgttgctt 114  Q
    |||||||||||  |||||||||||| | |||| ||||||||||||||||| |||||  |||| || |||||||| ||||||| ||| || | | ||||||    
19232600 ataggagttacaacattattaaacaccttattattacactcattccataagacccatacacaaaggagccaaatgagctgaaagaatgacctctttgctt 19232699  T
115 tgccaccacctattgaatagacaaactg 142  Q
    ||||||||||| ||||||| ||||||||    
19232700 tgccaccacctgttgaatacacaaactg 19232727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 19227264 - 19227300
Alignment:
58 tccataaaacccaagcacagagaagccaaataagctg 94  Q
    ||||||||||||||||||| |||||||||||||||||    
19227264 tccataaaacccaagcacaaagaagccaaataagctg 19227300  T

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Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 142
Target Start/End: Complemental strand, 46909102 - 46908973
Alignment:
14 gcataggagttacgccattattaaacagcctatt-ttacactcattccataaaacccaagcacagagaagccaaataagctgaaggaacgatcgcgttgc 112  Q
    |||||||||||||  ||||||||||||||||||| || | |||| ||||||| ||||||||||| |||||||||||||||||||||||| | ||||||||    
46909102 gcataggagttacaacattattaaacagcctattgtttcgctcagtccataacacccaagcacaaagaagccaaataagctgaaggaacaaccgcgttgc 46909003  T
113 tttgccaccacctattgaatagacaaactg 142  Q
    ||||||||||||| | ||||||||||||||    
46909002 tttgccaccacctgtcgaatagacaaactg 46908973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 125
Target Start/End: Original strand, 50543961 - 50544038
Alignment:
48 ttacactcattccataaaacccaagcacagagaagccaaataagctgaaggaacgatcgcgttgctttgccaccacct 125  Q
    |||||||| ||||||||||||||| | || | ||||||||||||||||||||| | ||| |||||||| |||||||||    
50543961 ttacactcgttccataaaacccaaacgcacaaaagccaaataagctgaaggaaggctcgagttgctttaccaccacct 50544038  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 27925429 - 27925366
Alignment:
81 agccaaataagctgaaggaacgatcgcgttgctttgccaccacctattgaatagacaaactgaa 144  Q
    |||||||||||||||||||| || ||||||||||| ||||||||| |||| || ||||||||||    
27925429 agccaaataagctgaaggaaagaccgcgttgctttaccaccacctgttgagtaaacaaactgaa 27925366  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 125
Target Start/End: Complemental strand, 24124241 - 24124164
Alignment:
48 ttacactcattccataaaacccaagcacagagaagccaaataagctgaaggaacgatcgcgttgctttgccaccacct 125  Q
    |||| ||||||||||||||||||| | || | ||| ||||||||||||||||| |  || ||||||||||||||||||    
24124241 ttacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgccaccacct 24124164  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 23818322 - 23818394
Alignment:
53 ctcattccataaaacccaagcacagagaagccaaataagctgaaggaacgatcgcgttgctttgccaccacct 125  Q
    |||||||||||| |||||| | || |  |||||||||||||||||||| || ||  ||||| |||||||||||    
23818322 ctcattccataagacccaaacgcacaatagccaaataagctgaaggaatgaccgttttgctctgccaccacct 23818394  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 49500726 - 49500654
Alignment:
53 ctcattccataaaacccaagcacagagaagccaaataagctgaaggaacgatcgcgttgctttgccaccacct 125  Q
    |||||||||||| |||||| | || |  |||||||||||||||||||| || ||  ||||| |||||||||||    
49500726 ctcattccataagacccaaacgcacaatagccaaataagctgaaggaatgaccgttttgctctgccaccacct 49500654  T

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Target: chr1 (Bit Score: 52; Significance: 5e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 7397145 - 7397018
Alignment:
16 ataggagttacgccattattaaacagcctatt-ttacactcattccataaaacccaagcacagagaagccaaataagctgaaggaacgatcgcgttgctt 114  Q
    |||||||||||  |||||||||||| |||||| ||||||||||||||||| |||||| |||| || |||||||| ||||||| |||  | | | ||||||    
7397145 ataggagttacaacattattaaacaccctattattacactcattccataagacccaaacacaaaggagccaaatgagctgaaagaataacctctttgctt 7397046  T
115 tgccaccacctattgaatagacaaactg 142  Q
    ||||||||||| ||||||| | ||||||    
7397045 tgccaccacctgttgaatacataaactg 7397018  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 28098328 - 28098284
Alignment:
81 agccaaataagctgaaggaacgatcgcgttgctttgccaccacct 125  Q
    |||||||||||||||||||| || ||| |||||||||||||||||    
28098328 agccaaataagctgaaggaatgaccgctttgctttgccaccacct 28098284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 21335651 - 21335545
Alignment:
20 gagttacgccattattaaacagcctatt-ttacactcattccataaaacccaagcacagagaagccaaataagctgaaggaacgatcgcgttgctttgcc 118  Q
    |||||||  ||||||| || |||||||| || | |||||||||||| || ||| |||| |  |||||||||||||||||||| || ||  | ||||||||    
21335651 gagttaccacattattgaaaagcctattcttgcgctcattccataagactcaaacacacaatagccaaataagctgaaggaatgaccgtttcgctttgcc 21335552  T
119 accacct 125  Q
    |||||||    
21335551 accacct 21335545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 26720445 - 26720491
Alignment:
54 tcattccataaaacccaagcacagagaagccaaataagctgaaggaa 100  Q
    |||||||||||||||||| |||| | ||||||||| |||||||||||    
26720445 tcattccataaaacccaaacacacaaaagccaaatcagctgaaggaa 26720491  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 4076982 - 4077092
Alignment:
16 ataggagttacgccattattaaacagcctatt-ttacactcattccataaaacccaagcacagagaagccaaataagctgaaggaacgatcgcgttgctt 114  Q
    |||| ||||||  |||| ||||| ||||| || |||| ||||||||||||||||||| |||| |  |||||||||||||||||||| |  || |||||||    
4076982 atagaagttacaacatttttaaagagcctgttattacgctcattccataaaacccaaacacacaacagccaaataagctgaaggaaggtgcgagttgctt 4077081  T
115 tgccaccacct 125  Q
    |||||||||||    
4077082 tgccaccacct 4077092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 27941913 - 27941845
Alignment:
30 attattaaacagcctatt-ttacactcattccataaaacccaagcacagagaagccaaataagctgaag 97  Q
    |||||| ||||||||||| ||||  ||| ||||||| ||||||||||| ||||||||||| ||||||||    
27941913 attattgaacagcctattattacgttcagtccataatacccaagcacaaagaagccaaatgagctgaag 27941845  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 44784921 - 44784879
Alignment:
81 agccaaataagctgaaggaacgatcgcgttgctttgccaccac 123  Q
    |||||||||||||||||||| || ||| |||||||||||||||    
44784921 agccaaataagctgaaggaatgaccgctttgctttgccaccac 44784879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 17804696 - 17804732
Alignment:
58 tccataaaacccaagcacagagaagccaaataagctg 94  Q
    ||||||| ||||| |||||||||||||||||||||||    
17804696 tccataagacccaggcacagagaagccaaataagctg 17804732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 34518994 - 34518958
Alignment:
58 tccataaaacccaagcacagagaagccaaataagctg 94  Q
    ||||||||||||| ||||| |||||||||||||||||    
34518994 tccataaaacccaggcacaaagaagccaaataagctg 34518958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 45987800 - 45987836
Alignment:
58 tccataaaacccaagcacagagaagccaaataagctg 94  Q
    ||||||||||||| ||||| |||||||||||||||||    
45987800 tccataaaacccaggcacaaagaagccaaataagctg 45987836  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 11155223 - 11155335
Alignment:
14 gcataggagttacgccattattaaacagcctatt-ttacactcattccataaaacccaagcacagagaagccaaataagctgaaggaacgatcgcgttgc 112  Q
    |||||||||||||  ||||||| || |||||||| || | |||||||||||| |||||  | || |  ||||||||||| |||||||| |||||| ||||    
11155223 gcataggagttacaacattattgaaaagcctattattgcgctcattccataagacccacacgcacaatagccaaataagttgaaggaatgatcgctttgc 11155322  T
113 tttgccaccacct 125  Q
    |||||||||||||    
11155323 tttgccaccacct 11155335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 36156930 - 36156974
Alignment:
81 agccaaataagctgaaggaacgatcgcgttgctttgccaccacct 125  Q
    ||||||||||| |||||||| |||| | |||||||||||||||||    
36156930 agccaaataagttgaaggaatgatcactttgctttgccaccacct 36156974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 18935375 - 18935485
Alignment:
16 ataggagttacgccattattaaacagcctatt-ttacactcattccataaaacccaagcacagagaagccaaataagctgaaggaacgatcgcgttgctt 114  Q
    |||| ||||||  |||||||||| || || || |||| |||||||||||||||||||   || | ||||||||||||||||||||| |  || |||||||    
18935375 atagaagttacaacattattaaagagtctgttattacgctcattccataaaacccaaatgcacaaaagccaaataagctgaaggaaggcgcgagttgctt 18935474  T
115 tgccaccacct 125  Q
    |||||||||||    
18935475 tgccaccacct 18935485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 10563700 - 10563660
Alignment:
57 ttccataaaacccaagcacagagaagccaaataagctgaag 97  Q
    ||||||||||||||| |||| | ||||||||||||||||||    
10563700 ttccataaaacccaaacacacaaaagccaaataagctgaag 10563660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 19644741 - 19644777
Alignment:
58 tccataaaacccaagcacagagaagccaaataagctg 94  Q
    ||||||||||||| ||||| |||||||||||||||||    
19644741 tccataaaacccaggcacaaagaagccaaataagctg 19644777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 53779794 - 53779834
Alignment:
57 ttccataaaacccaagcacagagaagccaaataagctgaag 97  Q
    ||||||||||||||| |||| | ||||||||||||||||||    
53779794 ttccataaaacccaaacacacaaaagccaaataagctgaag 53779834  T

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Target: scaffold0179 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 7274 - 7320
Alignment:
54 tcattccataaaacccaagcacagagaagccaaataagctgaaggaa 100  Q
    |||||||||||||||||| |||| | ||||||||| |||||||||||    
7274 tcattccataaaacccaaacacacaaaagccaaatcagctgaaggaa 7320  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 40090046 - 40090156
Alignment:
16 ataggagttacgccattattaaacagcctatt-ttacactcattccataaaacccaagcacagagaagccaaataagctgaaggaacgatcgcgttgctt 114  Q
    |||| ||||||  ||||||| || ||||| || |||| ||| ||||||| |||||||   || | ||||||||||||||||||||| | |||  ||||||    
40090046 atagaagttacaacattattgaaaagcctgttattacgctcgttccatagaacccaacagcacaaaagccaaataagctgaaggaaggctcgaattgctt 40090145  T
115 tgccaccacct 125  Q
    |||||||||||    
40090146 tgccaccacct 40090156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 20591910 - 20591955
Alignment:
81 agccaaataagctgaaggaacgatcgcgttgctttgccaccaccta 126  Q
    |||||||||||||||||||| || ||  ||||||||||||||||||    
20591910 agccaaataagctgaaggaatgaccgttttgctttgccaccaccta 20591955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 22095640 - 22095604
Alignment:
58 tccataaaacccaagcacagagaagccaaataagctg 94  Q
    |||||||||||||| |||| |||||||||||||||||    
22095640 tccataaaacccaaacacaaagaagccaaataagctg 22095604  T

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Target: scaffold0108 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 10659 - 10695
Alignment:
58 tccataaaacccaagcacagagaagccaaataagctg 94  Q
    ||||||||||||| ||||| |||||||||||||||||    
10659 tccataaaacccaggcacaaagaagccaaataagctg 10695  T

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