View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2568_low_8 (Length: 545)
Name: NF2568_low_8
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 189 - 536
Target Start/End: Complemental strand, 13471380 - 13471037
Alignment:
| Q |
189 |
actaaattttgtcctttctatagtttctctctt-gtagatagctacataccataatatgcctgaatcagaaatctgtcaactgatgatactggtgatgaa |
287 |
Q |
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| T |
13471380 |
actaaattttgtcctttctatagtttctctctttgtagatagctacataccataatatgcctgaatcagaaatctgtcaactgatgatactggtgatgaa |
13471281 |
T |
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| Q |
288 |
gccgtttttgatacataatttcatataaataataatcttccaaaggatatggtggtgaaaatcgataagcatgcatgcatgctaccctctctgctctgtc |
387 |
Q |
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| T |
13471280 |
gccgtttttgatacataatttcatataaataataatcttccaaaggatatggtggtgaaaatcgataagcatgcatgcatgctaccatctctgctctgtc |
13471181 |
T |
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| Q |
388 |
tctatctctattatggaatagttcctacaatcctaactctttcatttaacctctcttaacttgatactttctctgccccatgctcctatgctacactcta |
487 |
Q |
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| T |
13471180 |
t------ctattatggaatagttcctccaatcctaactctctcatttaacctctcttaacttgatactttctctgccccatgctcctattctatactcta |
13471087 |
T |
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| Q |
488 |
ctctactgcttacatttgtcacacaaa-tatatggtgtagttatattctt |
536 |
Q |
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| T |
13471086 |
ctctactgcttacatttttcacacaaattatatggagtagttattttctt |
13471037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 25 - 163
Target Start/End: Complemental strand, 13471546 - 13471407
Alignment:
| Q |
25 |
gtaaataaatgttaacgacaaaatgcagaagcaaagtttacttatcctacgtcaagtattaaggttcgtcaaatgaacaatcactttcacttctgatatg |
124 |
Q |
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| T |
13471546 |
gtaaagaaatgttaacgacaaaatgcagaagcaaactttacttatcctacgtcaagtattaaggttcgtcaaatgaacaatcactttcacttctgatatg |
13471447 |
T |
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| Q |
125 |
-aacatagggttgactacttgactcaatccaaatgtcatg |
163 |
Q |
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| T |
13471446 |
aaacatagggttgactacttgactcaatccaaatgtcatg |
13471407 |
T |
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