View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2568_low_9 (Length: 484)
Name: NF2568_low_9
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 234 - 446
Target Start/End: Original strand, 8392259 - 8392463
Alignment:
| Q |
234 |
ggaaaagttatagtatgtttaataattcgtataaattttgaaggtattcagcaaaattgtaactacataagtagaacactgatttaagcataagtcaatt |
333 |
Q |
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| T |
8392259 |
ggaaaagttatagtatgtttaataattcgtataaattttgaaggtattcagcaaaattgtaactacataagtagaacactgatttaagcataagtcaatt |
8392358 |
T |
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| Q |
334 |
aaaattgtaccccacttaagacttttatccgcattttactccattggagattacactaattaatcagcctggataaataaaaagagtaaagacttttgtc |
433 |
Q |
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| T |
8392359 |
aaaattgtaccccacttaagacttttatccgcattttactccattggagatt--actaattaatcagcctggat------aaagagtaaagacttttgtc |
8392450 |
T |
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| Q |
434 |
tttaacattgcca |
446 |
Q |
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| T |
8392451 |
tttaacattgcca |
8392463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 8392034 - 8392167
Alignment:
| Q |
7 |
tcgaagaaaattgctttcttcattgtgaatacaaacaatttaaaatcagattgttcatcttgtggtttaggaataagaatatcaattttgttaataataa |
106 |
Q |
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| T |
8392034 |
tcgaataaaattgctttcttcattgtgaatacaaacaatttaaaatcagattgttcatcttgtggtttaggaataagaatatcaattttgttaataataa |
8392133 |
T |
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| Q |
107 |
ttgggacagagtagcaactgctttatttgctagt |
140 |
Q |
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| T |
8392134 |
ttgggacagagtagcaactgctttatttgctagt |
8392167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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