View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2569_high_10 (Length: 221)
Name: NF2569_high_10
Description: NF2569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2569_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 23168396 - 23168205
Alignment:
| Q |
18 |
cttttcgccacttttggacctgaactaggcgctttccttccaaatgattatgaggaggcatgtaaagaaagaccttttgaaggaaccgggcttgctatgc |
117 |
Q |
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| T |
23168396 |
cttttcgccacttttggacctgaactaggcgctttccttccaaatgattctgaggaggcatgtaaagacagaccttttgaaggaaccgggcttgctatgc |
23168297 |
T |
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| Q |
118 |
ttcgatacaaagagaataagcctatccaagatttgttttctgaggccttcaatgtctttctaaactgcgatgtctttatgccttcctttgct |
209 |
Q |
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| T |
23168296 |
ttcgatacaaagagaataagcatatccaagatttgttttctgaggccttcaatgtctttctaaactgcgatgtctttatgctttcctttgct |
23168205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 14658522 - 14658716
Alignment:
| Q |
18 |
cttttcgccacttttggacctgaactaggcgctttccttccaaatgattatgaggaggcatgtaaagaaagaccttttgaaggaaccgggcttgctatgc |
117 |
Q |
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| T |
14658522 |
ctttttgccactattggacctgaactaggcgttttccttccaaaagattctgaggaggcatgtaaagacatacattttgaaggagccgggcttgctatgc |
14658621 |
T |
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| Q |
118 |
ttcgatacaaagagaataagcctatccaagatttgttttctgaggccttcaatgtctttctaaactgcgatgtctttatgccttcctttgcttct |
212 |
Q |
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| T |
14658622 |
ttcgatacaaagagaataagcctagccaagatttgttttctgaggccttcaatgtctttctaaactgtgatgtcttaatgccttcctttgcttct |
14658716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 25105862 - 25106051
Alignment:
| Q |
19 |
ttttcgccacttttggacctgaactaggcgctttccttccaaatgattatgaggaggcatgtaaagaaagaccttttgaaggaaccgggcttgctatgct |
118 |
Q |
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|||| ||||||||||||| |||| |||||| ||||||||||| |||| ||| ||||||||| |||| ||||||| ||||| | |||||||||||||| |
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| T |
25105862 |
tttttgccacttttggacatgaatgaggcgccttccttccaaaagattctgatgaggcatgtgaagatggacctttcaaaggagc-gggcttgctatgct |
25105960 |
T |
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| Q |
119 |
tcgatacaaagagaataagcctatccaagatttgttttctgaggccttcaatgtctttctaaactgcgatgtctttatgccttcctttgct |
209 |
Q |
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| T |
25105961 |
ccaatacaaaaaggatagaccttgccaagatttgttttctgaggccttcaatttttttctagattgcaatgtttttatgccttcttttgct |
25106051 |
T |
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