View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2569_high_11 (Length: 203)
Name: NF2569_high_11
Description: NF2569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2569_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 6e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 30892999 - 30893132
Alignment:
| Q |
19 |
cccactgcttgaaagacaaacttgatacttatattccccaaactatgtaaattatgctaaattacgtaaattgtgattatgcttgtgtatttattaatac |
118 |
Q |
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| T |
30892999 |
cccactgcttgaaagacaaacttgatacttatattccccaaactatgtaaattatgctaaattacgtaaattgtgattatgcttgtgtatttattaatac |
30893098 |
T |
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| Q |
119 |
aattaaggaatgaaaagtaaatactgttgttaac |
152 |
Q |
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| T |
30893099 |
aattaaggaatgaaaagtaaatactgttgttaac |
30893132 |
T |
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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 30719320 - 30719268
Alignment:
| Q |
100 |
cttgtgtatttattaatacaattaaggaatgaaaagtaaatactgttgttaac |
152 |
Q |
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||||||||| |||||||||||||||||||| || ||||||| |||||||||| |
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| T |
30719320 |
cttgtgtatctattaatacaattaaggaatcaagagtaaatcttgttgttaac |
30719268 |
T |
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