View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2569_high_5 (Length: 267)
Name: NF2569_high_5
Description: NF2569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2569_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 10427767 - 10427908
Alignment:
| Q |
1 |
cttttgggtgaaatggaatgaagttcattcatatcatcaatcacatgatcaatatatttatagaagtgagtacttatatgacgagttgagatgtgttatg |
100 |
Q |
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| T |
10427767 |
cttttgggtgaaatggaatgaagttcattcatatcatcaatcacatgatcaatatatttatagaagtgagtacttatatgacgagttgagatgtgttatg |
10427866 |
T |
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| Q |
101 |
ctagatgtcctaaaaatttgatcggataaataacttttcatt |
142 |
Q |
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| T |
10427867 |
ctagatgtcctaaaaatttgatcggataaataacttttcatt |
10427908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 148 - 251
Target Start/End: Original strand, 10431205 - 10431299
Alignment:
| Q |
148 |
agtgacaaatgttacgttgtaagtaggaaggtatgttagtagtttttgacatagaattgaggacctattgcttatttatccatttattttataggtttac |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10431205 |
agtgacaaatgttacgttgtaagtaggaaggtatgttagt---ttttga------attgagaacctattgcttatttatccatttattttataggtttac |
10431295 |
T |
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