View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2569_high_9 (Length: 237)
Name: NF2569_high_9
Description: NF2569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2569_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 1510376 - 1510261
Alignment:
| Q |
1 |
agtaagtttaagatttatcataaactttaactccttgtgcaagcatcaagcatgtctctgattttgctcattcctgaatattcatgcggcaagtaacttg |
100 |
Q |
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| T |
1510376 |
agtaagtttaagatttgtcataaactttaactccttgtgcaagcatcaagcatgtctctgattttgctcattcctgaatattcatgcggcaagtaacttg |
1510277 |
T |
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| Q |
101 |
tggatgttcttctgca |
116 |
Q |
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| T |
1510276 |
tggatgttcttctgca |
1510261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 1510263 - 1510187
Alignment:
| Q |
147 |
gcataaaatattttaggaagcttatatagtataccgatattaatcgtagatacgaaatgtttcagaccaataaatat |
223 |
Q |
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| T |
1510263 |
gcataaaatattttaggaagcttatatagtataccgatattaatcgtagatacgaaatgtttcagaccaataaatat |
1510187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 3066625 - 3066801
Alignment:
| Q |
20 |
ataaactttaactccttgtgcaagcatcaagcatgtctctgattttgctcattcctgaatattcatgcggcaagtaacttgtggatgttcttctgcaaaa |
119 |
Q |
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| T |
3066625 |
ataaaatttaactccttgtggaagtatcaagcatggctctgattttgctcattcctgaatattcacgcagcaagtaacttctggatatccttctgcaaag |
3066724 |
T |
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| Q |
120 |
atgtgaaacgggaaaagatgagattaagcataaaatattttaggaagcttatatagtataccgatattaatcgtagatac |
199 |
Q |
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| T |
3066725 |
atgtgaaacggg-gtagatcagattaagcataaaatgttttaggaag--tccatagtatacggatattaatcgtggatac |
3066801 |
T |
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