View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2569_low_8 (Length: 250)
Name: NF2569_low_8
Description: NF2569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2569_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 1510417 - 1510662
Alignment:
| Q |
1 |
agtaataatcaaagaaatcctacagtttactaatcacagaaatttaattggtattgcaactttcaaaagtcagaaatttttaattatcatagaaaactaa |
100 |
Q |
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| T |
1510417 |
agtaataatcaaagaaatcctacagtttactaatcacagaaatttaattggtattgcaactttcaaaagtcagaaatttttaattatcatagaaaactaa |
1510516 |
T |
|
| Q |
101 |
aggcataatctcaagaactaatccttagacctaatctcaaatgaattgtttagtaaatgcaagtaaaacaaaacaagagtttgctttcatccaataccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1510517 |
aggcataatctcaagaactaatccttagacctaatctcaaatgaattgtttagtaaatgcaagtaaaacaaaacaagagtttgctttcatccaataccaa |
1510616 |
T |
|
| Q |
201 |
cttctcttatatttgtaaaatgcaccgctacaagtaatctctgctc |
246 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1510617 |
cttctcttatatttgtaaaatgcaccgctccaagtaatctctgctc |
1510662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 193
Target Start/End: Complemental strand, 1077590 - 1077557
Alignment:
| Q |
160 |
caagtaaaacaaaacaagagtttgctttcatcca |
193 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
1077590 |
caagtaaaacaaaacatgagtttgctttcatcca |
1077557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 193
Target Start/End: Original strand, 2847100 - 2847133
Alignment:
| Q |
160 |
caagtaaaacaaaacaagagtttgctttcatcca |
193 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
2847100 |
caagtaaaacaaaacatgagtttgctttcatcca |
2847133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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