View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2570_high_1 (Length: 357)

Name: NF2570_high_1
Description: NF2570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2570_high_1
NF2570_high_1
[»] chr6 (8 HSPs)
chr6 (255-348)||(31944650-31944743)
chr6 (83-163)||(23916065-23916145)
chr6 (99-162)||(16718116-16718179)
chr6 (99-163)||(12748331-12748395)
chr6 (95-167)||(9045948-9046019)
chr6 (95-162)||(34792651-34792717)
chr6 (125-163)||(9521811-9521849)
chr6 (95-163)||(14313986-14314052)
[»] chr1 (20 HSPs)
chr1 (83-163)||(526908-526988)
chr1 (83-164)||(13276472-13276553)
chr1 (83-162)||(46845666-46845745)
chr1 (83-163)||(39858440-39858520)
chr1 (85-164)||(40314187-40314266)
chr1 (99-161)||(29731307-29731369)
chr1 (99-164)||(47571561-47571626)
chr1 (100-163)||(49430483-49430546)
chr1 (95-165)||(15066017-15066087)
chr1 (95-163)||(1995068-1995135)
chr1 (98-168)||(2402919-2402988)
chr1 (99-161)||(48489568-48489630)
chr1 (95-164)||(40030902-40030970)
chr1 (95-164)||(15224985-15225056)
chr1 (94-162)||(33502524-33502592)
chr1 (95-163)||(44797466-44797533)
chr1 (95-169)||(27325620-27325694)
chr1 (95-163)||(19989352-19989419)
chr1 (102-150)||(26041093-26041141)
chr1 (95-163)||(32267464-32267531)
[»] chr5 (9 HSPs)
chr5 (83-163)||(15285422-15285502)
chr5 (83-159)||(35906087-35906163)
chr5 (99-163)||(8076374-8076438)
chr5 (252-328)||(9395142-9395218)
chr5 (99-163)||(12248392-12248456)
chr5 (99-162)||(43100208-43100271)
chr5 (95-164)||(13988363-13988431)
chr5 (95-163)||(11247308-11247375)
chr5 (99-171)||(36890496-36890567)
[»] chr2 (12 HSPs)
chr2 (83-162)||(3121703-3121782)
chr2 (83-159)||(24475714-24475790)
chr2 (83-164)||(33300074-33300155)
chr2 (85-172)||(14945726-14945813)
chr2 (99-164)||(40216528-40216593)
chr2 (95-164)||(32599246-32599314)
chr2 (95-162)||(13696965-13697031)
chr2 (95-162)||(17823695-17823761)
chr2 (99-164)||(14242522-14242586)
chr2 (95-163)||(33555361-33555428)
chr2 (94-162)||(36272661-36272728)
chr2 (128-162)||(25333322-25333356)
[»] chr3 (7 HSPs)
chr3 (94-164)||(23004869-23004939)
chr3 (85-162)||(44092433-44092510)
chr3 (95-164)||(46135640-46135709)
chr3 (99-162)||(36674519-36674582)
chr3 (95-162)||(40725962-40726029)
chr3 (95-162)||(48034808-48034874)
chr3 (95-160)||(12224006-12224069)
[»] chr7 (14 HSPs)
chr7 (83-163)||(31741136-31741216)
chr7 (99-163)||(38349458-38349522)
chr7 (98-161)||(36675940-36676003)
chr7 (99-164)||(28713796-28713861)
chr7 (264-339)||(1342649-1342726)
chr7 (95-163)||(43359087-43359155)
chr7 (85-140)||(6220185-6220240)
chr7 (95-170)||(33496615-33496689)
chr7 (99-160)||(37536317-37536378)
chr7 (95-163)||(46576241-46576308)
chr7 (99-163)||(13768488-13768553)
chr7 (95-163)||(30922709-30922776)
chr7 (95-162)||(42974395-42974461)
chr7 (125-160)||(43659261-43659296)
[»] chr4 (16 HSPs)
chr4 (83-163)||(50498303-50498383)
chr4 (83-163)||(22364470-22364550)
chr4 (83-158)||(32290302-32290377)
chr4 (99-163)||(14149959-14150023)
chr4 (99-162)||(48525445-48525508)
chr4 (95-166)||(17044118-17044188)
chr4 (101-164)||(42179147-42179210)
chr4 (95-163)||(9118514-9118582)
chr4 (95-162)||(37605691-37605757)
chr4 (122-163)||(20107230-20107271)
chr4 (95-162)||(25164471-25164537)
chr4 (95-162)||(45995895-45995961)
chr4 (97-163)||(14786735-14786801)
chr4 (125-162)||(5817380-5817417)
chr4 (95-164)||(55281324-55281392)
chr4 (95-162)||(3287195-3287262)
[»] chr8 (8 HSPs)
chr8 (83-151)||(2599624-2599692)
chr8 (83-162)||(28898088-28898167)
chr8 (99-162)||(11904972-11905035)
chr8 (99-163)||(35200675-35200739)
chr8 (94-163)||(45413554-45413623)
chr8 (95-166)||(14342183-14342253)
chr8 (95-163)||(4076768-4076835)
chr8 (94-154)||(42354443-42354503)
[»] scaffold0005 (1 HSPs)
scaffold0005 (97-163)||(52929-52995)
[»] scaffold0933 (1 HSPs)
scaffold0933 (99-163)||(3055-3118)


Alignment Details
Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 255 - 348
Target Start/End: Original strand, 31944650 - 31944743
Alignment:
Q  255 gttttaaattgaagcgggaaaatgaattgaatattgcgcttttaattttcgctacttttgatttcccgcacttgttgaacccgctgagtataat 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||    
T  31944650 gttttaaattgaagcgggaaaatgaattgaatattgcgcttttaattttcgctacttttcatttccagcacttgttgaacccgctgagtgtaat 31944743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 23916065 - 23916145
Alignment:
Q  83 agaaactcacattcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  23916065 agaaactcacattcacacactctcacatgggagtggtacatagtgtgtatgcagaaaagggtgttcatgaaacattatcct 23916145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 16718116 - 16718179
Alignment:
Q  99 acactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcc 162  Q
    ||||| ||||||||||||| ||||  |||||||| |||||||||||||||||||||||||||||    
T  16718116 acactatcacatggaagtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcc 16718179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 12748331 - 12748395
Alignment:
Q  99 acactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    ||||||||||||||||||| ||||  ||||||||  ||||||||||||| |||||||||||||||    
T  12748331 acactctcacatggaagtggtacaatgtgtgtataaagaaaagggtgtttatgaaacattatcct 12748395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 95 - 167
Target Start/End: Original strand, 9045948 - 9046019
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcctattt 167  Q
    ||||||||||||||||||| ||| ||||  ||||||||| | ||||| |||| ||||||||||||||||||||    
T  9045948 tcacacactctcacatgga-gtggtacaatgtgtgtatgaaaaaaagtgtgtacatgaaacattatcctattt 9046019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 34792717 - 34792651
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcc 162  Q
    ||||||||||||||||||| ||| ||||  ||||||||| | ||||| |||| |||||||||||||||    
T  34792717 tcacacactctcacatgga-gtggtacaatgtgtgtatgcaaaaaagtgtgtacatgaaacattatcc 34792651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 163
Target Start/End: Complemental strand, 9521849 - 9521811
Alignment:
Q  125 gtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  9521849 gtgtgtatggagaaaaggatgtacatgaaacattatcct 9521811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 14314052 - 14313986
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    ||||||||||||||||  ||||| ||||  ||||||||||| ||||| |||| ||||||||||||||||    
T  14314052 tcacacactctcacata-aagtggtacaatgtgtgtatgga-aaaagtgtgtacatgaaacattatcct 14313986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 83 - 163
Target Start/End: Complemental strand, 526988 - 526908
Alignment:
Q  83 agaaactcacattcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  526988 agaaactcacattcacacactctcacatggaagtggtacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 526908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 13276553 - 13276472
Alignment:
Q  83 agaaactcacattcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatccta 164  Q
    |||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13276553 agaaactcactttcacacactctcacatgggagtggtacatagtgtgtatggagaaaagggtgttcatgaaacattatccta 13276472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 83 - 162
Target Start/End: Complemental strand, 46845745 - 46845666
Alignment:
Q  83 agaaactcacattcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcc 162  Q
    |||||||||||||||||||||||||||||| |||| |||||| |||||||| ||||||||||||||||||||||||||||    
T  46845745 agaaactcacattcacacactctcacatgggagtggtacataatgtgtatgcagaaaagggtgttcatgaaacattatcc 46845666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 39858440 - 39858520
Alignment:
Q  83 agaaactcacattcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    |||||||||| ||||||| |||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39858440 agaaactcactttcacactctctcatatgggagtggtacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 39858520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 40314187 - 40314266
Alignment:
Q  85 aaactcacattcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatccta 164  Q
    ||||||||||||||||||||||| |||| |||| || ||||| |||||||| |||| |||||||||||||||||||||||    
T  40314187 aaactcacattcacacactctcatatgggagtggtatatagtatgtatggaaaaaatggtgttcatgaaacattatccta 40314266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 29731307 - 29731369
Alignment:
Q  99 acactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatc 161  Q
    ||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  29731307 acactctcacatggaagtgatacaatgtgtgtatagagaaaagggtgttcatgaaacattatc 29731369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 99 - 164
Target Start/End: Complemental strand, 47571626 - 47571561
Alignment:
Q  99 acactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatccta 164  Q
    ||||||||||||||||||| ||||  |||||||| ||| |||||||||||||||||||||||||||    
T  47571626 acactctcacatggaagtggtacaatgtgtgtatagaggaaagggtgttcatgaaacattatccta 47571561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 49430546 - 49430483
Alignment:
Q  100 cactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    |||| |||||||| |||| ||||||||||||||||||||||| |||||||||||| ||||||||    
T  49430546 cactttcacatgggagtggtacatagtgtgtatggagaaaagagtgttcatgaaatattatcct 49430483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 15066087 - 15066017
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcctat 165  Q
    |||||||||||||||||  |||| ||||| || |||||||| ||||| |||||||||||||||||||||||    
T  15066087 tcacacactctcacatgagagtggtacattgtatgtatggaaaaaagagtgttcatgaaacattatcctat 15066017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 1995068 - 1995135
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    ||||||||||||||||||| ||| ||||  ||||||||||| ||||| |||| ||||||||||||||||    
T  1995068 tcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 1995135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 2402988 - 2402919
Alignment:
Q  98 cacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcctatttt 168  Q
    ||||||||||||||||| || ||||  ||||||||||| ||||| |||| |||||||||||||||| ||||    
T  2402988 cacactctcacatggaa-tggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctttttt 2402919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 48489568 - 48489630
Alignment:
Q  99 acactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatc 161  Q
    ||||| ||||||||||||| ||||  || ||||| ||||||| ||||||||||||||||||||    
T  48489568 acactatcacatggaagtggtacaatgtatgtatagagaaaatggtgttcatgaaacattatc 48489630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 40030902 - 40030970
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatccta 164  Q
    ||||||||||||||||||| ||| ||||  ||||||||| | ||||| |||| |||||||||||||||||    
T  40030902 tcacacactctcacatgga-gtggtacaatgtgtgtatgaaaaaaagtgtgtacatgaaacattatccta 40030970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 164
Target Start/End: Complemental strand, 15225056 - 15224985
Alignment:
Q  95 tcacacactctcacatggaagtg--atacatagtgtgtatggagaaaagggtgttcatgaaacattatccta 164  Q
    |||||||||||||||| || |||  ||||   ||| ||| ||||||||||||||||||||||||||||||||    
T  15225056 tcacacactctcacatagaggtggtatacgatgtgcgtacggagaaaagggtgttcatgaaacattatccta 15224985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 33502592 - 33502524
Alignment:
Q  94 ttcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcc 162  Q
    ||||||||||||||||| || ||| ||||  || |||| | |||||||| |||||||||||||||||||    
T  33502592 ttcacacactctcacatagaggtggtacaatgtatgtacgaagaaaaggatgttcatgaaacattatcc 33502524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 44797533 - 44797466
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    ||||||||||||||||| ||||| ||||  |||||||| || ||||| |||| ||||||||||||||||    
T  44797533 tcacacactctcacatg-aagtggtacaatgtgtgtatagaaaaaagtgtgtacatgaaacattatcct 44797466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 27325694 - 27325620
Alignment:
Q  95 tcacacactct-cacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcctattttt 169  Q
    ||||||||||| |||||||| ||| ||||  ||||||||||| ||||| |||| ||||||||||||||||| ||||    
T  27325694 tcacacactcttcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctaatttt 27325620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 19989352 - 19989419
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    |||||||||||||||||  |||| ||||  |||||||| |||||||| ||||  |||||||||||||||    
T  19989352 tcacacactctcacatgagagtggtacaatgtgtgtat-gagaaaagagtgtctatgaaacattatcct 19989419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 26041093 - 26041141
Alignment:
Q  102 ctctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcat 150  Q
    ||||||||| || ||| ||||  ||||||||||||||||||||||||||    
T  26041093 ctctcacatagaggtggtacaatgtgtgtatggagaaaagggtgttcat 26041141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 32267531 - 32267464
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    ||||||||||||||||||| ||  ||||  ||||||||||| ||||| |||| ||||||| ||||||||    
T  32267531 tcacacactctcacatgga-gtagtacaatgtgtgtatggaaaaaagtgtgtacatgaaatattatcct 32267464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 15285422 - 15285502
Alignment:
Q  83 agaaactcacattcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  15285422 agaaactcacattcacacactctcacatgggagtggtacatagtgtgtatgcagaaaagggtgttcatgaaacattatcct 15285502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 35906087 - 35906163
Alignment:
Q  83 agaaactcacattcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacatta 159  Q
    |||||||||| || |||||||||||||||  |||| |||||||| ||||||||||||||||||||||||||||||||    
T  35906087 agaaactcacttttacacactctcacatgagagtggtacatagtatgtatggagaaaagggtgttcatgaaacatta 35906163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 8076374 - 8076438
Alignment:
Q  99 acactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    ||||||||||||||||||| ||||  || ||||| ||||||||||||||||||||||||||||||    
T  8076374 acactctcacatggaagtggtacaatgtatgtatagagaaaagggtgttcatgaaacattatcct 8076438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 252 - 328
Target Start/End: Original strand, 9395142 - 9395218
Alignment:
Q  252 gcggttttaaattgaagcgggaaaatgaattgaatattgcgcttttaattttcgctacttttgatttcccgcacttg 328  Q
    |||||||| || |||||||||||||||||||||||  ||| |||||||||||  |||||||| ||||||||||||||    
T  9395142 gcggttttgaactgaagcgggaaaatgaattgaatcgtgcacttttaattttgactacttttcatttcccgcacttg 9395218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 12248392 - 12248456
Alignment:
Q  99 acactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    ||||| ||||||||||||| ||||  |||||||| ||||||||||||||||||||||||||||||    
T  12248392 acactatcacatggaagtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcct 12248456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 43100271 - 43100208
Alignment:
Q  99 acactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcc 162  Q
    ||||| ||||||| ||||| ||||  |||||||| |||||||||||||||||||||||||||||    
T  43100271 acactatcacatgaaagtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcc 43100208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 13988363 - 13988431
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatccta 164  Q
    ||||||||||||||||||| ||| ||||  ||||||||||| ||||| |||| |||||||||||||||||    
T  13988363 tcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatccta 13988431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 11247308 - 11247375
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    ||||||||||||||||||| ||| ||||  ||||||||||| ||||| |||| ||||||||||||||||    
T  11247308 tcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 11247375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 36890496 - 36890567
Alignment:
Q  99 acactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcctattttttg 171  Q
    |||||||||||| || ||| ||||  ||||||||||| ||||| |||| |||||||||||||||||| |||||    
T  36890496 acactctcacatcga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctatattttg 36890567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 83 - 162
Target Start/End: Original strand, 3121703 - 3121782
Alignment:
Q  83 agaaactcacattcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcc 162  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  3121703 agaaactcacattcacacactctcacatgggagtggtacatagtgtgtatgcagaaaagggtgttcatgaaacattatcc 3121782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 24475790 - 24475714
Alignment:
Q  83 agaaactcacattcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacatta 159  Q
    |||||||||| || |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  24475790 agaaactcacttttacacactctcacgtggaagtggtacatagtgtgtatggagaaaagggtgttcatgaaacatta 24475714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 33300074 - 33300155
Alignment:
Q  83 agaaactcacattcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatccta 164  Q
    |||||||||| ||||||||||||||||||| |||| ||||||||||||||| |||| | |||||||||||||||||||||||    
T  33300074 agaaactcactttcacacactctcacatgggagtggtacatagtgtgtatgaagaatacggtgttcatgaaacattatccta 33300155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 14945813 - 14945726
Alignment:
Q  85 aaactcacattcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcctattttttgt 172  Q
    |||||||||||||| ||||||||||| | |||| |||||| |||||||| ||||||||||||||||||||||||||||| || |||||    
T  14945813 aaactcacattcacgcactctcacataggagtggtacataatgtgtatgaagaaaagggtgttcatgaaacattatccttttctttgt 14945726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 99 - 164
Target Start/End: Original strand, 40216528 - 40216593
Alignment:
Q  99 acactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatccta 164  Q
    ||||||||||||||||||| ||||  |||||||| ||| |||||||||||||||||||||||||||    
T  40216528 acactctcacatggaagtggtacaatgtgtgtatagaggaaagggtgttcatgaaacattatccta 40216593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 164
Target Start/End: Complemental strand, 32599314 - 32599246
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatccta 164  Q
    ||||||||||||||||||| ||| ||||  ||||||||||| ||||| |||| |||||||||||||||||    
T  32599314 tcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatccta 32599246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 13697031 - 13696965
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcc 162  Q
    ||||||||||||||||||| ||| ||||  ||||||||||| ||||| |||| |||||||||||||||    
T  13697031 tcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 13696965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 17823695 - 17823761
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcc 162  Q
    ||||||||||||||||||| ||| ||||  ||||||||||| ||||| |||| |||||||||||||||    
T  17823695 tcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 17823761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 164
Target Start/End: Complemental strand, 14242586 - 14242522
Alignment:
Q  99 acactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatccta 164  Q
    ||||||||||||||| ||| ||||  ||||||||||| ||||| |||| |||||||||||||||||    
T  14242586 acactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatccta 14242522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 33555428 - 33555361
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    ||||||| ||||||||||| ||| ||||  ||||||||||| ||||| |||| ||||||||||||||||    
T  33555428 tcacacattctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 33555361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 36272728 - 36272661
Alignment:
Q  94 ttcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcc 162  Q
    |||||||||||||||||||| ||| ||||  |||| |||||| ||||| |||| |||||||||||||||    
T  36272728 ttcacacactctcacatgga-gtggtacaatgtgtatatggaaaaaagtgtgtacatgaaacattatcc 36272661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 162
Target Start/End: Original strand, 25333322 - 25333356
Alignment:
Q  128 tgtatggagaaaagggtgttcatgaaacattatcc 162  Q
    |||||| ||||||||||||||||||||||||||||    
T  25333322 tgtatgaagaaaagggtgttcatgaaacattatcc 25333356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 94 - 164
Target Start/End: Original strand, 23004869 - 23004939
Alignment:
Q  94 ttcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatccta 164  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  23004869 ttcacacactctcacatggaagtggtgcatagtgtgtatggagaaaagggtgttcatgaaacattatccta 23004939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 85 - 162
Target Start/End: Complemental strand, 44092510 - 44092433
Alignment:
Q  85 aaactcacattcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcc 162  Q
    |||||| |||||||||||||| |||||  |||| |||||||| ||||  |||||||||||||||||||||||||||||    
T  44092510 aaactctcattcacacactcttacatgagagtggtacatagtttgtagagagaaaagggtgttcatgaaacattatcc 44092433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 46135640 - 46135709
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatccta 164  Q
    |||||||||||||||| |  ||| ||||  |||||||||||||||| | |||||||||||||||||||||    
T  46135640 tcacacactctcacataggggtggtacaatgtgtgtatggagaaaatgatgttcatgaaacattatccta 46135709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 36674582 - 36674519
Alignment:
Q  99 acactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcc 162  Q
    ||||||||| ||||||||| ||||  |||||||| ||||||||| |||||||||||||| ||||    
T  36674582 acactctcatatggaagtggtacaatgtgtgtatagagaaaaggatgttcatgaaacataatcc 36674519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 40725962 - 40726029
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcc 162  Q
    ||||||| |||||||| | |||||||||||||||||||| | ||||  |||| |||||||||||||||    
T  40725962 tcacacattctcacataggagtgatacatagtgtgtatgaaaaaaaatgtgtccatgaaacattatcc 40726029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 48034874 - 48034808
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcc 162  Q
    ||||||||||||||||| ||||| ||||  ||||||||||| ||||| |||| ||| |||||||||||    
T  48034874 tcacacactctcacatg-aagtggtacaatgtgtgtatggaaaaaagtgtgtacataaaacattatcc 48034808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 12224069 - 12224006
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattat 160  Q
    |||||||||||||| || ||||| |||| |||||||||||| ||||| |||| |||||||||||||    
T  12224069 tcacacactctcacctg-aagtggtaca-agtgtgtatggaaaaaagtgtgtacatgaaacattat 12224006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 31741136 - 31741216
Alignment:
Q  83 agaaactcacattcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    |||||||||| ||||||||||||||||||| |||| |||||||||||||| || |||||| ||||||||||||||||||||    
T  31741136 agaaactcactttcacacactctcacatgggagtggtacatagtgtgtatagaaaaaaggatgttcatgaaacattatcct 31741216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 38349522 - 38349458
Alignment:
Q  99 acactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    ||||||||||||||||||| ||||  |||||||| ||| ||||||||||||||||||||||||||    
T  38349522 acactctcacatggaagtggtacaatgtgtgtatagaggaaagggtgttcatgaaacattatcct 38349458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 36675940 - 36676003
Alignment:
Q  98 cacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatc 161  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||| || ||| ||||||    
T  36675940 cacactctcacatggaagtgatacatagtatatatggagaaaagggtgttgatcaaatattatc 36676003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 99 - 164
Target Start/End: Original strand, 28713796 - 28713861
Alignment:
Q  99 acactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatccta 164  Q
    ||||||||||||| ||||| ||||   ||||||| |||||||||||||||||||||||||||||||    
T  28713796 acactctcacatgaaagtggtacaatatgtgtatagagaaaagggtgttcatgaaacattatccta 28713861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 264 - 339
Target Start/End: Original strand, 1342649 - 1342726
Alignment:
Q  264 tgaagcgggaaaatgaattgaatattgcgcttttaattttcgctacttttg---atttcccgcacttgttgaacccgct 339  Q
    ||||||||||||||||||  ||||||||||||  ||||||||||||||||    |||||||||||||||||||||||||    
T  1342649 tgaagcgggaaaatgaatc-aatattgcgcttacaattttcgctacttttcttcatttcccgcacttgttgaacccgct 1342726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 43359087 - 43359155
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    |||||||||||||||||   ||||||||| |||||||||||||||| |||||  |||||||||||||||    
T  43359087 tcacacactctcacatgagggtgatacattgtgtgtatggagaaaatggtgtcaatgaaacattatcct 43359155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 140
Target Start/End: Complemental strand, 6220240 - 6220185
Alignment:
Q  85 aaactcacattcacacactctcacatggaagtgatacatagtgtgtatggagaaaa 140  Q
    |||||||||||||||||||||||||||  |||| ||||||||||||||||| ||||    
T  6220240 aaactcacattcacacactctcacatgagagtggtacatagtgtgtatggaaaaaa 6220185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 170
Target Start/End: Original strand, 33496615 - 33496689
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcctatttttt 170  Q
    ||||||||||||||||||| ||| || |  ||||||||||| ||||| |||| |||||||||||||||||||||||    
T  33496615 tcacacactctcacatgga-gtggtataatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctatttttt 33496689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 37536378 - 37536317
Alignment:
Q  99 acactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattat 160  Q
    ||||||||||||| ||||| ||||  |||||||| ||||||| |||||||||||||||||||    
T  37536378 acactctcacatgaaagtggtacaatgtgtgtatagagaaaatggtgttcatgaaacattat 37536317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 46576308 - 46576241
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    ||||||||||||||||||| ||| ||||  ||||||||||| ||||| |||| ||||||||||||||||    
T  46576308 tcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 46576241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 13768488 - 13768553
Alignment:
Q  99 acactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatg-aaacattatcct 163  Q
    ||||||||| ||||||||||||||   ||||||| || ||||||||||||||| ||||||||||||    
T  13768488 acactctcatatggaagtgatacaatatgtgtatagaaaaaagggtgttcatgaaaacattatcct 13768553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 30922776 - 30922709
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    ||||||||||||||||||| ||| ||||  ||||||||||| |||||  ||| ||||||||||||||||    
T  30922776 tcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtatgtacatgaaacattatcct 30922709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 42974461 - 42974395
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcc 162  Q
    ||||||||||| |||||| |||| ||||  ||||||||||| | || |||||||||||||||||||||    
T  42974461 tcacacactcttacatgggagtg-tacaatgtgtgtatggaaacaaaggtgttcatgaaacattatcc 42974395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 125 - 160
Target Start/End: Original strand, 43659261 - 43659296
Alignment:
Q  125 gtgtgtatggagaaaagggtgttcatgaaacattat 160  Q
    ||||||||||| ||||||||||||||||||||||||    
T  43659261 gtgtgtatggaaaaaagggtgttcatgaaacattat 43659296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 50498303 - 50498383
Alignment:
Q  83 agaaactcacattcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    ||||||||||||||||||||||||| |||| |||| || ||||| ||||||||||||| ||||||||||||||||||||||    
T  50498303 agaaactcacattcacacactctcatatgggagtggtatatagtatgtatggagaaaatggtgttcatgaaacattatcct 50498383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 83 - 163
Target Start/End: Complemental strand, 22364550 - 22364470
Alignment:
Q  83 agaaactcacattcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    |||||||||| || | |||||||||||||| |||| |||||| | ||||||||||||||||||||||||||||||||||||    
T  22364550 agaaactcacttttatacactctcacatgggagtggtacataatatgtatggagaaaagggtgttcatgaaacattatcct 22364470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 158
Target Start/End: Original strand, 32290302 - 32290377
Alignment:
Q  83 agaaactcacattcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacatt 158  Q
    ||||| |||| |||| |||||||||||||| |||| |||||||| |||||||||||||| ||||||||||||||||    
T  32290302 agaaattcactttcatacactctcacatgggagtggtacatagtatgtatggagaaaagagtgttcatgaaacatt 32290377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 14150023 - 14149959
Alignment:
Q  99 acactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    ||||| ||||||||||||| ||||  |||||||| ||||||||||||||||||||||||||||||    
T  14150023 acactttcacatggaagtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcct 14149959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 48525445 - 48525508
Alignment:
Q  99 acactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcc 162  Q
    ||||||||||||||||||| ||||  |||||||| ||| |||||||||||||||||||||||||    
T  48525445 acactctcacatggaagtggtacaatgtgtgtatagaggaaagggtgttcatgaaacattatcc 48525508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 17044118 - 17044188
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcctatt 166  Q
    ||||||||||||||||||| ||| ||||  ||||||||||| ||||| |||| |||||||||||||||||||    
T  17044118 tcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctatt 17044188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 42179210 - 42179147
Alignment:
Q  101 actctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatccta 164  Q
    |||||||||| | |||| ||||||||||||||| | |||||| |||||||||||||||||||||    
T  42179210 actctcacataggagtggtacatagtgtgtatgaaaaaaaggatgttcatgaaacattatccta 42179147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 9118582 - 9118514
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    |||| |||||||||||| | ||| ||||| || ||||||||| ||||||||||||||||| ||||||||    
T  9118582 tcacgcactctcacatgaatgtggtacattgtatgtatggaggaaagggtgttcatgaaatattatcct 9118514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 37605757 - 37605691
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcc 162  Q
    ||||||||||||||||||| ||| ||||  ||||||||||| ||||| |||| |||||||||||||||    
T  37605757 tcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 37605691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 20107230 - 20107271
Alignment:
Q  122 atagtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    |||||||||||| | |||||||||||||||||||||||||||    
T  20107230 atagtgtgtatgaaaaaaagggtgttcatgaaacattatcct 20107271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 25164537 - 25164471
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcc 162  Q
    ||||||||||||||||||| ||| ||||  ||||||||| | ||||| |||| |||||||||||||||    
T  25164537 tcacacactctcacatgga-gtggtacaatgtgtgtatgcaaaaaagtgtgtacatgaaacattatcc 25164471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 45995961 - 45995895
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcc 162  Q
    ||||||||||||||||||| ||| ||||  ||||||||||| ||||  |||| |||||||||||||||    
T  45995961 tcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaaatgtgtacatgaaacattatcc 45995895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 163
Target Start/End: Complemental strand, 14786801 - 14786735
Alignment:
Q  97 acacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    ||||| |||||||||  |||| |||||| |||||||| | |||| ||||| ||||||||||||||||    
T  14786801 acacaatctcacatgagagtggtacataatgtgtatgaaaaaaatggtgtccatgaaacattatcct 14786735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 5817417 - 5817380
Alignment:
Q  125 gtgtgtatggagaaaagggtgttcatgaaacattatcc 162  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  5817417 gtgtgtatggagaaaaggatgtacatgaaacattatcc 5817380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 55281324 - 55281392
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatccta 164  Q
    ||||||| ||||||||||| ||| ||||  || |||||||| ||||| |||| |||||||||||||||||    
T  55281324 tcacacattctcacatgga-gtggtacaatgtatgtatggaaaaaagtgtgtacatgaaacattatccta 55281392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 3287195 - 3287262
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatgg-agaaaagggtgttcatgaaacattatcc 162  Q
    |||||||||||||||||| |||| ||||  |||||||||| | ||||| |||| |||||||||||||||    
T  3287195 tcacacactctcacatgg-agtggtacaatgtgtgtatggaaaaaaagtgtgtacatgaaacattatcc 3287262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 2599624 - 2599692
Alignment:
Q  83 agaaactcacattcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatg 151  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||||||||||||||    
T  2599624 agaaactcacattcacacactctcacatgggagtggtacatagtgtgtatgaaaaaaagggtgttcatg 2599692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 83 - 162
Target Start/End: Original strand, 28898088 - 28898167
Alignment:
Q  83 agaaactcacattcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcc 162  Q
    |||||||| | |||||||||||||| |||  |||| |||||||||||||||||||||| |||||||||||||||||||||    
T  28898088 agaaactccctttcacacactctcatatgagagtggtacatagtgtgtatggagaaaatggtgttcatgaaacattatcc 28898167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 11904972 - 11905035
Alignment:
Q  99 acactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcc 162  Q
    ||||||||||||||||||| ||||  |||||||| |||||||||||||||||||||||||||||    
T  11904972 acactctcacatggaagtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcc 11905035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 35200675 - 35200739
Alignment:
Q  99 acactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    ||||||||||||||||||| ||||  |||||||| ||||||||||||||||| ||||||||||||    
T  35200675 acactctcacatggaagtggtacaatgtgtgtatagagaaaagggtgttcatcaaacattatcct 35200739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 45413623 - 45413554
Alignment:
Q  94 ttcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    ||||| ||| ||||||| | |||| | |||||||||||||||||||||||||||||||||||||| ||||    
T  45413623 ttcacgcaccctcacataggagtggtgcatagtgtgtatggagaaaagggtgttcatgaaacattgtcct 45413554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 14342253 - 14342183
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcctatt 166  Q
    ||||||||||||||||||| ||| ||||  ||||||||||| ||||| |||| |||||||||||||||||||    
T  14342253 tcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctatt 14342183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 4076835 - 4076768
Alignment:
Q  95 tcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    |||||||||||||||| || ||| ||||   |||||||||| ||||| |||| ||||||||||||||||    
T  4076835 tcacacactctcacataga-gtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcct 4076768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 154
Target Start/End: Complemental strand, 42354503 - 42354443
Alignment:
Q  94 ttcacacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaa 154  Q
    |||||| ||||||||||||| ||| ||||   ||||||||||||||| ||||| |||||||    
T  42354503 ttcacatactctcacatggaggtggtacaatatgtgtatggagaaaaaggtgtccatgaaa 42354443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 163
Target Start/End: Original strand, 52929 - 52995
Alignment:
Q  97 acacactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    ||||| |||||||||  |||| |||||| |||||||| | |||| ||||| ||||||||||||||||    
T  52929 acacaatctcacatgagagtggtacataatgtgtatgaaaaaaatggtgtccatgaaacattatcct 52995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 3118 - 3055
Alignment:
Q  99 acactctcacatggaagtgatacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 163  Q
    ||||||||||||||| ||| ||||  ||||||||||| ||||| ||||  |||||||||||||||    
T  3118 acactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtatatgaaacattatcct 3055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University