View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2570_high_3 (Length: 289)

Name: NF2570_high_3
Description: NF2570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2570_high_3
NF2570_high_3
[»] chr3 (17 HSPs)
chr3 (46-271)||(17749184-17749409)
chr3 (46-271)||(19050504-19050729)
chr3 (50-267)||(28047452-28047669)
chr3 (49-241)||(27464248-27464440)
chr3 (50-242)||(28129985-28130177)
chr3 (50-267)||(27909833-27910050)
chr3 (108-267)||(11408887-11409046)
chr3 (108-243)||(28079497-28079632)
chr3 (65-267)||(27998628-27998830)
chr3 (50-267)||(27962903-27963120)
chr3 (50-237)||(28143913-28144100)
chr3 (114-267)||(28178126-28178279)
chr3 (108-238)||(28492244-28492374)
chr3 (108-238)||(28472203-28472333)
chr3 (108-273)||(28513190-28513355)
chr3 (49-94)||(18081253-18081298)
chr3 (49-94)||(26239528-26239573)
[»] chr4 (4 HSPs)
chr4 (50-267)||(9330120-9330337)
chr4 (50-267)||(9383903-9384120)
chr4 (179-267)||(9329826-9329914)
chr4 (179-267)||(9383609-9383697)
[»] chr7 (1 HSPs)
chr7 (108-267)||(8694545-8694704)
[»] chr5 (1 HSPs)
chr5 (50-170)||(26027162-26027282)
[»] chr6 (1 HSPs)
chr6 (6-47)||(746332-746373)
[»] scaffold0067 (1 HSPs)
scaffold0067 (108-236)||(24049-24177)
[»] scaffold0854 (1 HSPs)
scaffold0854 (49-90)||(4429-4470)


Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 46 - 271
Target Start/End: Complemental strand, 17749409 - 17749184
Alignment:
Q  46 tgcttctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaatatttgaaagaattgttcaatggccctctttcttttgac 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  17749409 tgcttctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaagaattgttcaatggccctctttcttttgac 17749310  T
Q  146 tctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgc 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17749309 tctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgc 17749210  T
Q  246 tggaaacatgcccgatgatgatgtcc 271  Q
    |||||| |||||||||| ||||||||    
T  17749209 tggaaaaatgcccgatgttgatgtcc 17749184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 46 - 271
Target Start/End: Complemental strand, 19050729 - 19050504
Alignment:
Q  46 tgcttctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaatatttgaaagaattgttcaatggccctctttcttttgac 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19050729 tgcttctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaagaattgttcaatggccctctttcttttgac 19050630  T
Q  146 tctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgc 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19050629 tctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgc 19050530  T
Q  246 tggaaacatgcccgatgatgatgtcc 271  Q
    |||||| |||||||||| ||||||||    
T  19050529 tggaaaaatgcccgatgttgatgtcc 19050504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 50 - 267
Target Start/End: Original strand, 28047452 - 28047669
Alignment:
Q  50 tctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaatatttgaaagaattgttcaatggccctctttcttttgactctc 149  Q
    ||||||||| |||  |||||||||| |||||||| |||  |||||||||  |||||| ||||| ||||||||| |||||| |||||||| ||||||||||    
T  28047452 tctcaagtatcaacggtcttctccaagttggttgaacttcatctttggaacctagaaaatttggaagaattgtgcaatggtcctctttcctttgactctc 28047551  T
Q  150 taaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctgga 249  Q
    | |||||||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  28047552 tgaacagtttagaggagctgtccatcaaggattgtaaacatttgaaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtatcgttgga 28047651  T
Q  250 aacatgcccgatgatgat 267  Q
    |  |||||||||| ||||    
T  28047652 aggatgcccgatgttgat 28047669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 49 - 241
Target Start/End: Complemental strand, 27464440 - 27464248
Alignment:
Q  49 ttctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaatatttgaaagaattgttcaatggccctctttcttttgactct 148  Q
    ||||||| | |||||||||||||||| |||||||||||||||||||||||  |||||| ||||| |||||||||||||||| ||| |||| |||||||||    
T  27464440 ttctcaatttccaaatgtcttctccaagttggttgtactagatctttggaacctagaaaatttggaagaattgttcaatggtcctgtttcctttgactct 27464341  T
Q  149 ctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtg 241  Q
    ||||||| |||||||||||||||||||||| | ||  |||||||||| ||||||||||||||||| |||||||| | |||| | |||||||||    
T  27464340 ctaaacaatttagagaagttgtccatcaagaactgtgaacatttgcagagcttatttaagtgcaagctaaacctctgcaatttgaagagtgtg 27464248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 50 - 242
Target Start/End: Original strand, 28129985 - 28130177
Alignment:
Q  50 tctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaatatttgaaagaattgttcaatggccctctttcttttgactctc 149  Q
    ||||||||  |||| |||||||||| ||||||||||||||| |||||||  | |||  ||||| |||||||||||||||| |||||||| ||||||||||    
T  28129985 tctcaagtgtcaaaagtcttctccaagttggttgtactagaactttggaaccaagataatttggaagaattgttcaatggtcctctttcctttgactctc 28130084  T
Q  150 taaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgt 242  Q
    | || |||||| || ||||||||||||  ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28130085 tgaaaagtttaaaggagttgtccatcagtgattgtaaacatttgaaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgt 28130177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 50 - 267
Target Start/End: Original strand, 27909833 - 27910050
Alignment:
Q  50 tctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaata-tttgaaagaattgttcaatggccctctttcttttgactct 148  Q
    ||||||||| |||| |||||||||| ||||||||||||||| ||  | |||   | ||| |||| |||||||||||||||| |||||||| |||||||||    
T  27909833 tctcaagtatcaaaagtcttctccaagttggttgtactagagctc-gaaggaatggataatttggaagaattgttcaatggtcctctttcctttgactct 27909931  T
Q  149 ctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctgg 248  Q
    || |||||||||||| |  |||||||||   |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  27909932 ctgaacagtttagaggatctgtccatcagtaattgcaaacatttgaaaagcttatttaagtgcaaactaaacctattcaatctaaagagtgtgtcgttgg 27910031  T
Q  249 aaacatgcccgatgatgat 267  Q
    ||| |||||||||| ||||    
T  27910032 aaagatgcccgatgttgat 27910050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 108 - 267
Target Start/End: Original strand, 11408887 - 11409046
Alignment:
Q  108 atttgaaagaattgttcaatggccctctttcttttgactctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaa 207  Q
    ||||| ||||||||||||||||| ||||||| ||||||||||| ||||||||||||||| |||||||||||||||| | | ||||| |||||||||||||    
T  11408887 atttggaagaattgttcaatggctctctttcctttgactctctgaacagtttagagaagctgtccatcaaggattgtacaaatttgaaaagcttatttaa 11408986  T
Q  208 gtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaacatgcccgatgatgat 267  Q
    |||||||||||||||||||||||||||||| |||| | || ||| |||||||||| ||||    
T  11408987 gtgcaacctaaacctattcaatctaaagagcgtgttgttgaaaagatgcccgatgttgat 11409046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 108 - 243
Target Start/End: Original strand, 28079497 - 28079632
Alignment:
Q  108 atttgaaagaattgttcaatggccctctttcttttgactctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaa 207  Q
    ||||| |||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||  ||||| ||||||||| |||||||||||||    
T  28079497 atttggaagaattgttcaatggtcctctttcctttgactctctgaacagtttagagaagttgtccatcagtgattgtaaacatttgaaaagcttatttaa 28079596  T
Q  208 gtgcaacctaaacctattcaatctaaagagtgtgtc 243  Q
    |||||| |||||||||||||||||||||||||||||    
T  28079597 gtgcaaactaaacctattcaatctaaagagtgtgtc 28079632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 65 - 267
Target Start/End: Original strand, 27998628 - 27998830
Alignment:
Q  65 gtcttctccatgttggttgtactagatctttggaggctagaatatttgaaagaattgttcaatggccctctttcttttgactctctaaacagtttagaga 164  Q
    |||||||||| ||||||||| ||||| |||||||  |||||  ||||| ||||||| | |||||| |||||||| ||||||||||| |||||||||||||    
T  27998628 gtcttctccaagttggttgtgctagaactttggaacctagataatttggaagaattatgcaatggtcctctttcctttgactctctgaacagtttagaga 27998727  T
Q  165 agttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaacatgcccgatgat 264  Q
    || ||| |||||   |||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||  |||||||||| |    
T  27998728 agctgtacatcatcaattgtaaacatttgaaaagcttatttaagtgcaaactaaacctattcaatctaaagagcgtgttgctggaaggatgcccgatgtt 27998827  T
Q  265 gat 267  Q
    |||    
T  27998828 gat 27998830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 50 - 267
Target Start/End: Original strand, 27962903 - 27963120
Alignment:
Q  50 tctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaatatttgaaagaattgttcaatggccctctttcttttgactctc 149  Q
    ||||||||| |||| |||||||||| ||||||||  ||||| ||| |||  |||||| ||||| |||||||||||||||| ||| | || |||||||||     
T  27962903 tctcaagtaacaaaagtcttctccaagttggttggcctagaacttaggaacctagaaaatttggaagaattgttcaatggtcctttgtcctttgactctt 27963002  T
Q  150 taaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctgga 249  Q
    | ||||||||||||||  | |||||  | ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  27963003 tgaacagtttagagaatctttccattgaagattgtaaacatttgaaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcattgga 27963102  T
Q  250 aacatgcccgatgatgat 267  Q
    |  |||||||||| ||||    
T  27963103 aggatgcccgatgttgat 27963120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 50 - 237
Target Start/End: Original strand, 28143913 - 28144100
Alignment:
Q  50 tctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaatatttgaaagaattgttcaatggccctctttcttttgactctc 149  Q
    ||||||||  |||| |||||||||| ||||||||||||| | |||||||  | | |  ||||| |||||||||||||||| |||||||| ||||||||||    
T  28143913 tctcaagtgtcaaaagtcttctccaagttggttgtactaaaactttggaaccaacataatttggaagaattgttcaatggtcctctttcctttgactctc 28144012  T
Q  150 taaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagag 237  Q
    | |||  ||||||||||||||||||| | ||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  28144013 tgaactttttagagaagttgtccatccaagattgtaaacatttgaaaagcttatttaagtgcaaactaaacctattcaatctaaagag 28144100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 114 - 267
Target Start/End: Original strand, 28178126 - 28178279
Alignment:
Q  114 aagaattgttcaatggccctctttcttttgactctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaa 213  Q
    |||||||||||||||| ||| |||| ||||||||||| ||||||||||||||| |||||||||| || || ||||||||  |||||||||||||||||||    
T  28178126 aagaattgttcaatggtcctgtttcctttgactctctgaacagtttagagaagctgtccatcaatgaatgtaaacatttaaaaagcttatttaagtgcaa 28178225  T
Q  214 cctaaacctattcaatctaaagagtgtgtcgctggaaacatgcccgatgatgat 267  Q
    ||||||||| | ||||||||||||| | ||  |||||  |||||||||| ||||    
T  28178226 cctaaacctctgcaatctaaagagtctttcattggaagaatgcccgatgttgat 28178279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 108 - 238
Target Start/End: Complemental strand, 28492374 - 28492244
Alignment:
Q  108 atttgaaagaattgttcaatggccctctttcttttgactctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaa 207  Q
    ||||| ||||||||||||| || |||||||| ||||||||||| ||||||||||||||  |||||||  ||||||| ||||||||| ||| ||||||| |    
T  28492374 atttggaagaattgttcaaaggtcctctttcctttgactctctgaacagtttagagaatctgtccattgaggattgtaaacatttgaaaatcttatttga 28492275  T
Q  208 gtgcaacctaaacctattcaatctaaagagt 238  Q
    ||||||| ||||||| | |||||||||||||    
T  28492274 gtgcaacataaacctctgcaatctaaagagt 28492244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 108 - 238
Target Start/End: Complemental strand, 28472333 - 28472203
Alignment:
Q  108 atttgaaagaattgttcaatggccctctttcttttgactctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaa 207  Q
    ||||| ||||||||||||  || |||||||| ||||||||||| ||||||||||||||  |||||||  ||||||| ||||||||| ||| ||||||| |    
T  28472333 atttggaagaattgttcagcggtcctctttcctttgactctctgaacagtttagagaatctgtccattgaggattgtaaacatttgaaaatcttatttga 28472234  T
Q  208 gtgcaacctaaacctattcaatctaaagagt 238  Q
    ||||||| ||||||| | |||||||||||||    
T  28472233 gtgcaacataaacctctgcaatctaaagagt 28472203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 108 - 273
Target Start/End: Complemental strand, 28513355 - 28513190
Alignment:
Q  108 atttgaaagaattgttcaatggccctctttcttttgactctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaa 207  Q
    ||||| ||||||||||||| || |||||||| ||||||||||| ||||||||||||||  |||||||  || |||| |||| |||| ||| ||||||  |    
T  28513355 atttggaagaattgttcaaaggtcctctttcctttgactctctgaacagtttagagaatctgtccattgagaattgtaaacgtttgaaaatcttattcga 28513256  T
Q  208 gtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaacatgcccgatgatgatgtccat 273  Q
    ||||||| ||||||| | ||||||||||||| | ||  |||||  |||||||||| |||| |||||    
T  28513255 gtgcaacataaacctctgcaatctaaagagtctttcattggaacgatgcccgatgttgatctccat 28513190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 18081298 - 18081253
Alignment:
Q  49 ttctcaagtaccaaatgtcttctccatgttggttgtactagatctt 94  Q
    |||||||||||||| ||||||||||| ||||||||||||| |||||    
T  18081298 ttctcaagtaccaactgtcttctccaagttggttgtactacatctt 18081253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 26239573 - 26239528
Alignment:
Q  49 ttctcaagtaccaaatgtcttctccatgttggttgtactagatctt 94  Q
    |||||||||||||| ||| ||||||| ||||||||||||| |||||    
T  26239573 ttctcaagtaccaattgttttctccaagttggttgtactaaatctt 26239528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 50 - 267
Target Start/End: Complemental strand, 9330337 - 9330120
Alignment:
Q  50 tctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaatatttgaaagaattgttcaatggccctctttcttttgactctc 149  Q
    ||||||||| |||| |||||||||| |||||||||||||||||||       ||||| ||||| |||||||||||||||| |||||||| |||||||||     
T  9330337 tctcaagtatcaaaagtcttctccaagttggttgtactagatcttaatgaattagaaaatttggaagaattgttcaatggtcctctttcctttgactctt 9330238  T
Q  150 taaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctgga 249  Q
    | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||    
T  9330237 tgaacagtttagagaagctgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagcgtgtcgttaga 9330138  T
Q  250 aacatgcccgatgatgat 267  Q
    |  |||||||||| ||||    
T  9330137 aggatgcccgatgttgat 9330120  T

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Target: chr4; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 50 - 267
Target Start/End: Complemental strand, 9384120 - 9383903
Alignment:
Q  50 tctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaatatttgaaagaattgttcaatggccctctttcttttgactctc 149  Q
    ||||||||| |||| |||||||||| |||||||||||||||||||       ||||| ||||| |||||||||||||||| |||||||| |||||||||     
T  9384120 tctcaagtatcaaaagtcttctccaagttggttgtactagatcttaatgaattagaaaatttggaagaattgttcaatggtcctctttcctttgactctt 9384021  T
Q  150 taaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctgga 249  Q
    | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||    
T  9384020 tgaacagtttagagaagctgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagcgtgtcgttaga 9383921  T
Q  250 aacatgcccgatgatgat 267  Q
    |  |||||||||| ||||    
T  9383920 aggatgcccgatgttgat 9383903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 179 - 267
Target Start/End: Complemental strand, 9329914 - 9329826
Alignment:
Q  179 gattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaacatgcccgatgatgat 267  Q
    ||||| ||||||||| |||| ||||| ||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||| ||||    
T  9329914 gattgtaaacatttgaaaagtttattcaagtgcaacataaacctattcaatctaaagagtgtgtcgttggaaagatgcccgatgttgat 9329826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 179 - 267
Target Start/End: Complemental strand, 9383697 - 9383609
Alignment:
Q  179 gattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaacatgcccgatgatgat 267  Q
    ||||| ||||||||| |||| ||||| ||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||| ||||    
T  9383697 gattgtaaacatttgaaaagtttattcaagtgcaacataaacctattcaatctaaagagtgtgtcgttggaaagatgcccgatgttgat 9383609  T

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Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 108 - 267
Target Start/End: Complemental strand, 8694704 - 8694545
Alignment:
Q  108 atttgaaagaattgttcaatggccctctttcttttgactctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaa 207  Q
    ||||| ||||||||| |||||| |||||||| ||||||||||| || |||||||||||| ||| |||||||||||| |||||||||||||||||||||||    
T  8694704 atttggaagaattgtgcaatggtcctctttcctttgactctctgaaaagtttagagaagctgtacatcaaggattgtaaacatttgcaaagcttatttaa 8694605  T
Q  208 gtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaacatgcccgatgatgat 267  Q
    |||||||||||||||||||||||||||||| |||||| || ||| ||| |||||| ||||    
T  8694604 gtgcaacctaaacctattcaatctaaagagcgtgtcgttgaaaagatgtccgatgttgat 8694545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 50 - 170
Target Start/End: Complemental strand, 26027282 - 26027162
Alignment:
Q  50 tctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaatatttgaaagaattgttcaatggccctctttcttttgactctc 149  Q
    ||||||||| |||| |||||||||| |||| |||||||||||||||  |  |||||| ||||| |||||||||||||||| |||||||| ||||||||||    
T  26027282 tctcaagtatcaaaagtcttctccaagttgattgtactagatctttctaacctagaaaatttggaagaattgttcaatggtcctctttcctttgactctc 26027183  T
Q  150 taaacagtttagagaagttgt 170  Q
    | |||||||||||||||||||    
T  26027182 tcaacagtttagagaagttgt 26027162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 746332 - 746373
Alignment:
Q  6 actattgccctagcaggcatattgatgctaatgttacctatg 47  Q
    |||||| |||||||| ||||||||||||||||||||||||||    
T  746332 actattaccctagcaagcatattgatgctaatgttacctatg 746373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 236
Target Start/End: Original strand, 24049 - 24177
Alignment:
Q  108 atttgaaagaattgttcaatggccctctttcttttgactctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaa 207  Q
    ||||| ||||| |||| ||||| ||  |||| ||||||| ||| || | |||| ||||| | || ||||||||||| ||||||||||||||||| |||||    
T  24049 atttggaagaactgtttaatggtcccgtttcctttgactttctgaagaatttacagaagatatcaatcaaggattgtaaacatttgcaaagcttgtttaa 24148  T
Q  208 gtgcaacctaaacctattcaatctaaaga 236  Q
     | | | | |||||| | |||||||||||    
T  24149 attcgagcaaaacctctgcaatctaaaga 24177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 4470 - 4429
Alignment:
Q  49 ttctcaagtaccaaatgtcttctccatgttggttgtactaga 90  Q
    |||| ||||||||| ||||||||||| |||||||||||||||    
T  4470 ttctgaagtaccaagtgtcttctccaagttggttgtactaga 4429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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