View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2570_low_1 (Length: 680)
Name: NF2570_low_1
Description: NF2570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2570_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 133 - 655
Target Start/End: Complemental strand, 49375931 - 49375409
Alignment:
| Q |
133 |
atttgatagttttgtctaaaattgtgatctcattgtgcaagcaagagtataattttggtgtccagtgtacacaaactggtaacataactgaaccaaaaat |
232 |
Q |
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| T |
49375931 |
atttgatagttttatctaaaattgtgatctcattgtgcaagcaagagtataattttggtgtccagtgtacacaaactggtaacataactgaaccaaaaat |
49375832 |
T |
|
| Q |
233 |
gaaagttgaataagcagataaatannnnnnnaagataaatgactaatttgggnnnnnnn--gaagttaaatgacatgttaaaactttaattaaggtaaaa |
330 |
Q |
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| T |
49375831 |
gaaagttgaataagcagttaaatatttttt-aagataaatgactaatttgggaaaaaagaagaagttaaatgacatgttaaaactttaattaaggtaaaa |
49375733 |
T |
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| Q |
331 |
gagaagttgtgtggttttgccttgaacgtgcactctgtgttgtttaaactttagaaaatgcagtgtgagatgagcaaaacacacgttgcttggtatggga |
430 |
Q |
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| T |
49375732 |
gagaagttgtgtggttttgccttgaacgtgcactctgtattgtttaaagtttagaaaatgcagtgtgagatgagcaaaacacacgttgcttggtatggga |
49375633 |
T |
|
| Q |
431 |
tgagaaagaaattttagggctctttcaaatagtgaatgagaaaaataggagtatggtatgagttaggatgttggcgtgggaaataaaaatggggtgtatt |
530 |
Q |
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| T |
49375632 |
tgagaaagaaattttagggctctttcaaatagtgaatgagaaaaataggagtatggtatgagttaggatgttggcgtgggaaataaaaatggggtgtatt |
49375533 |
T |
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| Q |
531 |
tagcagtgcatgtagaaaattgcaaagaaaaaagtttgttaactttgggcttcaatcgagaacagaaacagaactagtcgtccacagccacttctcaacg |
630 |
Q |
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| T |
49375532 |
tagcagtgcatgtagaaaattgcaaagaaaaaagtttgttaactttgggcttcaatcgagaacagaaacaggactagtcatccatagccacttctcaacg |
49375433 |
T |
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| Q |
631 |
gcatttatagaagactgttactttt |
655 |
Q |
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| T |
49375432 |
gcatttata-aagactattactttt |
49375409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 49376502 - 49376371
Alignment:
| Q |
1 |
tttcacctatgcatgttaccaaatgtctttaacatttaaaatggtaaattacattttcagctcgtcaaaataacat---ttacatcatagtcataaagac |
97 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
49376502 |
tttcatctatgcatgttaccaaatgtctttaacatttaaaatggtaaattacattttcagttcgtcaaaataacatttattacatcatagtcataaagac |
49376403 |
T |
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| Q |
98 |
tatttcaaacgggagcttctacggtgtagtca |
129 |
Q |
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| T |
49376402 |
tattacaaacgggagcttctacggtgcagtca |
49376371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 7449163 - 7449250
Alignment:
| Q |
133 |
atttgatagttttgtctaaaattgtgatctcattgtgcaagcaagagtataattttggtgtccagtgtacacaaactggtaacataac |
220 |
Q |
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| T |
7449163 |
atttgatagttttgtctaaaattgtgatctcattgtgcaagcaagagtataattttggtgtccagtgtacacaaaccggtaacataac |
7449250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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