View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2570_low_16 (Length: 259)
Name: NF2570_low_16
Description: NF2570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2570_low_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 29157438 - 29157673
Alignment:
| Q |
1 |
tggaagcaactcacaatttaataattgttttgttttataactcttctgtttgtttggaaccatgtgaacgtcactaatacatttatgcattttagtcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29157438 |
tggaagcaactcacaatttaataattgttttgttttataactcttctgtttgtttggaaccatgtgaatgtcactaatacatttatgcattttagtcctt |
29157537 |
T |
|
| Q |
101 |
ttccttattcatttctttacatgccatctctcttctaatttttcatccaattcaaccattcaactttcagtttttccttgtttcttttatgtaattgtgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29157538 |
ttccttattcatttctttacatgccatctctcttttaatttttcatccaattcaaccattcaactttcagtttttccttgtttcttttatgtaattgtgg |
29157637 |
T |
|
| Q |
201 |
tttgtgtcatgtcatgggtatatgtctatggaaagc |
236 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29157638 |
tttgtttcatgtcatgggtatatgtctatggaaagc |
29157673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 6e-46; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 25 - 142
Target Start/End: Original strand, 2583668 - 2583785
Alignment:
| Q |
25 |
ttgttttgttttataactcttctgtttgtttggaaccatgtgaacgtcactaatacatttatgcattttagtccttttccttattcatttctttacatgc |
124 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2583668 |
ttgttttgttttgtaactcttctctttgtttggaaacatgtgaatgtcactaatacatttatgcattttagtccttttccttattcatttatttacatgc |
2583767 |
T |
|
| Q |
125 |
catctctcttctaatttt |
142 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
2583768 |
catctctcttttaatttt |
2583785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 70 - 198
Target Start/End: Original strand, 2596499 - 2596628
Alignment:
| Q |
70 |
gtcactaatacatttatgcattttagtccttttccttattcatttctttacatgccatctctcttctaatttttcatccaattcaaccattcaactttca |
169 |
Q |
| |
|
||||||||||||||||||| ||| | ||||||||||| ||||||| ||||||| | ||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
2596499 |
gtcactaatacatttatgcctttaaatccttttccttgttcatttttttacattctatctctcttttaatttttcatccaattcaaccattcgactttca |
2596598 |
T |
|
| Q |
170 |
gtttttccttgtttctttt-atgtaattgt |
198 |
Q |
| |
|
|||||||| |||||||||| |||||||||| |
|
|
| T |
2596599 |
gtttttccatgtttcttttaatgtaattgt |
2596628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 2596454 - 2596500
Alignment:
| Q |
3 |
gaagcaactcacaatttaataattgttttgttttataactcttctgt |
49 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2596454 |
gaagcaactcacaatgtaataattgttttgttttataactcttctgt |
2596500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 2584987 - 2585051
Alignment:
| Q |
27 |
gttttgttttataactctt---ctgtttgtttggaaccatgtgaacgtcactaatacatttatgc |
88 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||| || ||||||||| ||||||||| |
|
|
| T |
2584987 |
gttttgttttataactcttcttctgtttgtttggaaacatgtaaatgtcactaattcatttatgc |
2585051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 46769773 - 46769964
Alignment:
| Q |
16 |
atttaataattgttttgttttataactctt---ctgtttgtttggaaccatgtgaacgtcactaatacatttatgcattttagtccttttccttattcat |
112 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||||| |||||| | ||||||| ||||||||||| ||||||||| | ||||||||||| |
|
|
| T |
46769773 |
atttaataattattttgttttataactcttcttctgtttgtttggaagcatgtggatgtcactagtacatttatgccttttagtccatatccttattcat |
46769872 |
T |
|
| Q |
113 |
ttctttacatgccatctctct-----tctaatttttcatccaattcaaccattcaac-tttcagtttttccttgtttcttttatgtaattgt |
198 |
Q |
| |
|
||||||| ||| ||||||| | | ||||||| |||||||||||| |||||||| ||||||||||||||| |||||| |||||||||| |
|
|
| T |
46769873 |
ttctttatatgtcatctctattttaatttaattttacatccaattcaatcattcaacttttcagtttttccttctttcttcaatgtaattgt |
46769964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University