View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2570_low_1_N (Length: 567)
Name: NF2570_low_1_N
Description: NF2570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2570_low_1_N |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 263 - 481
Target Start/End: Original strand, 787350 - 787568
Alignment:
| Q |
263 |
cccaattgaaatccccaattctaaaaatccaaactttgatacattcatcacatatctatatattacaatatttggcacaccaattttaaaatctaccttt |
362 |
Q |
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| T |
787350 |
cccaattgaaatccccaattctaaaaatccaaactttgatacattcatcacatatctatatattacaatatttggcacaccaattttaaaatgtaccttt |
787449 |
T |
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| Q |
363 |
acaaaagaaacaacaacccaaaattggaggaaattaacaaatgagagtgagagattacaatgaaggagaaggatggaacaacgaacacggtgaggaaagt |
462 |
Q |
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| T |
787450 |
acaaaagaaataacaactcaaaattggaggaaattaacaaatgagagtgagagattacaatgaaggagaaggaaggaacaacgaagacggtgaggaaagt |
787549 |
T |
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| Q |
463 |
acaaacaaaacatgttagt |
481 |
Q |
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| T |
787550 |
acaaacaaaacatgttagt |
787568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 787189 - 787251
Alignment:
| Q |
87 |
atgaatagaacacaataatcacccacaccaccaacaacaaaaataaaatgacccttttcaaag |
149 |
Q |
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| T |
787189 |
atgaatagaacacaataatcacccacaccaccaacaacaaatataaaatgacccttttcaaag |
787251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 381 - 481
Target Start/End: Original strand, 42078124 - 42078224
Alignment:
| Q |
381 |
caaaattggaggaaattaacaaatgagagtgagagattacaatgaaggagaaggatggaacaacgaacacggtgaggaaagtacaaacaaaacatgttag |
480 |
Q |
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| T |
42078124 |
caaaattggaggaaattcacaaatgagagtgagagattacgatgaaggagaaggaaggaacaacaaagtggatgaaaaaagtacaaataaaacatgttag |
42078223 |
T |
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| Q |
481 |
t |
481 |
Q |
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| |
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| T |
42078224 |
t |
42078224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 275 - 321
Target Start/End: Original strand, 42078067 - 42078113
Alignment:
| Q |
275 |
ccccaattctaaaaatccaaactttgatacattcatcacatatctat |
321 |
Q |
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| T |
42078067 |
ccccaattctaaaaatccaaactttaatacattcatcacagatctat |
42078113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 416
Target Start/End: Complemental strand, 21082712 - 21082641
Alignment:
| Q |
345 |
attttaaaatctacctttacaaaagaaacaacaacccaaaattggaggaaattaacaaatgagagtgagaga |
416 |
Q |
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| T |
21082712 |
atttcaaaatctacctttgaaaacgaaataacaatccaaaattggaggaaattcacaaatgagagagagaga |
21082641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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