View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2570_low_8 (Length: 311)
Name: NF2570_low_8
Description: NF2570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2570_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 23063852 - 23063559
Alignment:
| Q |
1 |
ttggtcatgaaataataaatcacaagttgaacctgtcacacaaaatcctttgcctttccactcttccaaacatttgttaatatcatcttgattacgtgca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23063852 |
ttggtcatgaaataataaatcacaagttgaacctgtcacacaaaatcctttgcctttccactcttccaaacatttgttaatatcatcttgattacgtgca |
23063753 |
T |
|
| Q |
101 |
catatatgcacacttgcaccaaattctgctaactcttccacaattgcatacctgattgattaatcacaaaattaacatgataaattacattacatgttct |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23063752 |
catatatgcacacttgccccaaattctgctaactcttccacaattgcatacctgattgattaatcacaaaattaacatgattcattacattacatgttct |
23063653 |
T |
|
| Q |
201 |
cattagagataatatatttgcattagagaactgaccctatgcctcgtgttccaccagtcactagagctgtcattccttggagtgaccatctttg |
294 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| |||| |
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| T |
23063652 |
cattagtgataagatatttgcattagagaactgaccctatgcctcgtgttccaccagttactagagctgtcattccatgaagtgaccatttttg |
23063559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 9 - 298
Target Start/End: Complemental strand, 23091394 - 23091105
Alignment:
| Q |
9 |
gaaataataaatcacaagttgaacctgtcacacaaaatcctttgcctttccactcttccaaacatttgttaatatcatcttgattacgtgcacatatatg |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
23091394 |
gaaataataaatcacaagttgaacctgtcacacaaaatcctttgcctttccactcttccaaacatttgttaatatcatcttgatttcttgcacatatatg |
23091295 |
T |
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| Q |
109 |
cacacttgcaccaaattctgctaactcttccacaattgcatacctgattgattaatcacaaaattaacatgataaattacattacatgttctcattagag |
208 |
Q |
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| T |
23091294 |
cacacttgccccaaattctgctaactcttccacaattgcatacctgattgattaatcacaaaattaacatgataaattatattacatgttctcatttgag |
23091195 |
T |
|
| Q |
209 |
ataatatatttgcattagagaactgaccctatgcctcgtgttccaccagtcactagagctgtcattccttggagtgaccatctttgatct |
298 |
Q |
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|||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23091194 |
ataagatatttgcattagagaactaaccctaagcctcgtgttccaccagtcactagagctgtcattccttggagtgaccatctttgatct |
23091105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 23080514 - 23080198
Alignment:
| Q |
1 |
ttggtcatgaaataataaatcacaagttgaacctgtcacacaaaatcctttgcctttccactcttccaaacatttgttaatatcatcttgattacgtgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
23080514 |
ttggtcatgaaataataaatcacaagttgaacctgtcacacaaaatcctttgcctttccactcttccaaacatttgttaatatcttcttgattgcgtgca |
23080415 |
T |
|
| Q |
101 |
catatatgcacacttgcaccaaattctgctaactcttccacaattgcatacctgattgattaatcac-------------------aaaattaacatgat |
181 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||| ||||| |
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| T |
23080414 |
catatatgcacacttgcaccaaattctgctaactcttccacaattgcatacctaattgattattcacaaaagaaacaaaacaaaataaaattatgatgat |
23080315 |
T |
|
| Q |
182 |
aaattacattacatgttctcattagagataatatatttgcattagagaactgaccctatgcctcgtgttccaccagtcactagagctgtcattccttgga |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23080314 |
aaattacattacatgttctcattagagataatatatttgcattagagaactgaccctatgcctcgtgttccaccagtcactagagctgtcattccttgga |
23080215 |
T |
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| Q |
282 |
gtgaccatctttgatct |
298 |
Q |
| |
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||||||||||||||||| |
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| T |
23080214 |
gtgaccatctttgatct |
23080198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 23056634 - 23056497
Alignment:
| Q |
12 |
ataataaatcacaagttgaacctgtcacacaaaatcctttgcctttccactcttccaaacatttgttaatatcatcttgattacgtgcacatatatgcac |
111 |
Q |
| |
|
||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23056634 |
ataataaatcacaagctgaccctgttacacaaaatcctttgcctttccactcttccaaacatttgttaatatcatcttgatttcgtgcacatatatgcac |
23056535 |
T |
|
| Q |
112 |
acttgcaccaaattctgctaactcttccacaattgcat |
149 |
Q |
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||||| ||||||||| |||| |||||||||||||||| |
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| T |
23056534 |
ccttgccccaaattctactaattcttccacaattgcat |
23056497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 153
Target Start/End: Complemental strand, 23035044 - 23034896
Alignment:
| Q |
5 |
tcatgaaataataaatcacaagttgaacctgtcacacaaaatcctttgcctttccactcttccaaacatttgttaatatcatcttgattacgtgcacata |
104 |
Q |
| |
|
||||||||||||| |||||| ||| ||||| ||| ||| |||||| ||||||||||||||||||||| |||||||| |||| |||||||||||||| |
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| T |
23035044 |
tcatgaaataatatatcacatactgatcctgttacattaaaccctttgtttttccactcttccaaacatttattaatatcttcttcattacgtgcacata |
23034945 |
T |
|
| Q |
105 |
tatgcacacttgcaccaaattctgctaactcttccacaattgcatacct |
153 |
Q |
| |
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||||||| ||| ||||||||||||||||||||||||||||| ||||| |
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| T |
23034944 |
catgcacagctgctccaaattctgctaactcttccacaattgcgtacct |
23034896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 153
Target Start/End: Complemental strand, 23026236 - 23026088
Alignment:
| Q |
5 |
tcatgaaataataaatcacaagttgaacctgtcacacaaaatcctttgcctttccactcttccaaacatttgttaatatcatcttgattacgtgcacata |
104 |
Q |
| |
|
|||||||||| || |||||| ||| ||||| ||| ||| |||||| ||||||||||||||||||||| |||||||| |||| |||||||||||||| |
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| T |
23026236 |
tcatgaaatagtatatcacatactgatcctgttacattaaaccctttgtttttccactcttccaaacatttattaatatcttcttcattacgtgcacata |
23026137 |
T |
|
| Q |
105 |
tatgcacacttgcaccaaattctgctaactcttccacaattgcatacct |
153 |
Q |
| |
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|||||||| ||| |||||||| ||||||||||| |||||||| ||||| |
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| T |
23026136 |
tatgcacagatgctccaaattcagctaactcttcaacaattgcgtacct |
23026088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 229 - 298
Target Start/End: Complemental strand, 23056388 - 23056319
Alignment:
| Q |
229 |
aactgaccctatgcctcgtgttccaccagtcactagagctgtcattccttggagtgaccatctttgatct |
298 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| ||||||||| | |||||||||||||||||||||||| |
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| T |
23056388 |
aactgaccctatgcctcgggttcccccagtcacaagagctgtcttcccttggagtgaccatctttgatct |
23056319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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