View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2570_low_9 (Length: 305)

Name: NF2570_low_9
Description: NF2570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2570_low_9
NF2570_low_9
[»] chr5 (7 HSPs)
chr5 (11-276)||(10887887-10888152)
chr5 (72-276)||(10866222-10866426)
chr5 (72-276)||(10873879-10874083)
chr5 (72-276)||(10878950-10879154)
chr5 (72-276)||(10884021-10884225)
chr5 (51-264)||(39675807-39676020)
chr5 (96-264)||(10045800-10045968)


Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 276
Target Start/End: Original strand, 10887887 - 10888152
Alignment:
Q  11 cataggtagcttctttggcacgactcctccggtcaattttgcagaaatgtcgacaacttcgtcttcatcatcatcgtaatgaaagatgaaggcagtgccg 110  Q
    ||||||||||||||| ||||| |||||||||||   |||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  10887887 cataggtagcttcttcggcacaactcctccggtgggttttgcagaattgtcgactacttcgtcttcatcatcatcgtaatgaatgatgaaggcagtgccg 10887986  T
Q  111 aaaaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatctcagagactgtgaggacgtggagaggtgtagaggttcggatctttt 210  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10887987 aagaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatctcagagactgtgaggatgtggagaggtgtagaggttcggatctttt 10888086  T
Q  211 cacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaacaacatttgtta 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  10888087 cacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaacagcgtttgtta 10888152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 72 - 276
Target Start/End: Complemental strand, 10866426 - 10866222
Alignment:
Q  72 tcttcatcatcatcgtaatgaaagatgaaggcagtgccgaaaaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatctcagaga 171  Q
    ||||| || ||||||||||||| |||||||||| ||||||| ||||  ||||||||||| |||||||||||||||||||| | ||| | |||||||||||    
T  10866426 tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga 10866327  T
Q  172 ctgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaacaacatt 271  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||    
T  10866326 ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt 10866227  T
Q  272 tgtta 276  Q
    |||||    
T  10866226 tgtta 10866222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 72 - 276
Target Start/End: Original strand, 10873879 - 10874083
Alignment:
Q  72 tcttcatcatcatcgtaatgaaagatgaaggcagtgccgaaaaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatctcagaga 171  Q
    ||||| || ||||||||||||| |||||||||| ||||||| ||||  ||||||||||| |||||||||||||||||||| | ||| | |||||||||||    
T  10873879 tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga 10873978  T
Q  172 ctgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaacaacatt 271  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||    
T  10873979 ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt 10874078  T
Q  272 tgtta 276  Q
    |||||    
T  10874079 tgtta 10874083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 72 - 276
Target Start/End: Original strand, 10878950 - 10879154
Alignment:
Q  72 tcttcatcatcatcgtaatgaaagatgaaggcagtgccgaaaaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatctcagaga 171  Q
    ||||| || ||||||||||||| |||||||||| ||||||| ||||  ||||||||||| |||||||||||||||||||| | ||| | |||||||||||    
T  10878950 tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga 10879049  T
Q  172 ctgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaacaacatt 271  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||    
T  10879050 ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt 10879149  T
Q  272 tgtta 276  Q
    |||||    
T  10879150 tgtta 10879154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 72 - 276
Target Start/End: Original strand, 10884021 - 10884225
Alignment:
Q  72 tcttcatcatcatcgtaatgaaagatgaaggcagtgccgaaaaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatctcagaga 171  Q
    ||||| || ||||||||||||| |||||||||| ||||||| ||||  ||||||||||| |||||||||||||||||||| | ||| | |||||||||||    
T  10884021 tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga 10884120  T
Q  172 ctgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaacaacatt 271  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||    
T  10884121 ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt 10884220  T
Q  272 tgtta 276  Q
    |||||    
T  10884221 tgtta 10884225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 51 - 264
Target Start/End: Complemental strand, 39676020 - 39675807
Alignment:
Q  51 gcagaaatgtcgacaacttcgtcttcatcatcatcgtaatgaaagatgaaggcagtgccgaaaaaagcaataaggtagacgaaggaagcgatgagggaaa 150  Q
    |||| ||||||  ||||||| ||||| || ||||||||||||| ||||||||||  ||| || |||||  |||||||||  | | |||| ||||||||||    
T  39676020 gcagcaatgtcagcaacttcatcttcttcttcatcgtaatgaaggatgaaggcaacgccaaagaaagccgtaaggtagataaggcaagcaatgagggaaa 39675921  T
Q  151 ctacagcaacaatctcagagactgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaa 250  Q
    ||| ||||| |||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||    
T  39675920 ctagagcaagaatctcggagattgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaa 39675821  T
Q  251 gagaccaaagaaaa 264  Q
    |||||| |||||||    
T  39675820 gagaccgaagaaaa 39675807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 96 - 264
Target Start/End: Complemental strand, 10045968 - 10045800
Alignment:
Q  96 atgaaggcagtgccgaaaaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatctcagagactgtgaggacgtggagaggtgtag 195  Q
    |||||| || ||||||| ||||| |||||||| |  |||||||| ||||||||||| ||| |  |||||||||||| |||||| || || |||||||| |    
T  10045968 atgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaagaggtgtgg 10045869  T
Q  196 aggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaa 264  Q
    ||||||||||||| ||||||||||||| ||||||||| |||||| |||||||||| ||||| |||||||    
T  10045868 aggttcggatcttctcacgccacctgtgaagaagaaaatacgcgacggagaagaaaagaccgaagaaaa 10045800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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