View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2571_high_1 (Length: 446)
Name: NF2571_high_1
Description: NF2571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2571_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 174 - 429
Target Start/End: Original strand, 21064451 - 21064708
Alignment:
| Q |
174 |
attggctctatatatgattgacaaatgtaattgattgataaaaggagcatacaacttcctatctcattaatggttaaaaatatctttcttgtactagaaa |
273 |
Q |
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| T |
21064451 |
attggctctatatatgattgacaaatgtaattgattgataaaaggagcatacaatttcctatctcattaatggttaaaaatatctttcttgtactagaaa |
21064550 |
T |
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| Q |
274 |
ttataagctaaattaaatctaacacgatgatgaaagcttaagacaattatataatattaatagagctactggtgtaaatttgaatgc--atggttgaggg |
371 |
Q |
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| T |
21064551 |
ttataagctaaattaaatctaacacgatgatgaaaccttaagacaattatataatattaatagagctactggtgtaaatttgaatgcatatggttgaggg |
21064650 |
T |
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| Q |
372 |
ctttatcaaaaaggaaaatgttttgtgtacgtatatacatatataaaccatgaaaaag |
429 |
Q |
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| T |
21064651 |
ctttatcaaaaaggaaaatgttttgtgtacgtatatacatatataaaccatgaaaaag |
21064708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 77 - 164
Target Start/End: Original strand, 21064298 - 21064385
Alignment:
| Q |
77 |
atttcttatctagctgcaaaccatccccaagaaataagttttgctatcaagattacatcattacaatttgcaactcatgtgaaatatt |
164 |
Q |
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| T |
21064298 |
atttcttatctagctgcaaaccatccccaagaaataagttttgctatcaagattacatcattacaatttgcaacttatgtgaaatatt |
21064385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 21064043 - 21064113
Alignment:
| Q |
14 |
gaacaaatacaatgcacacaagagccgattgtcacagtcacaacacacaatcacgaataaaatatttcttat |
85 |
Q |
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| T |
21064043 |
gaacaaatacaatgcacacaagagccgattgtcatagtcacaacacacaatcacgaat-aaatatttcttat |
21064113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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