View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2571_high_10 (Length: 272)
Name: NF2571_high_10
Description: NF2571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2571_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 256
Target Start/End: Original strand, 43133706 - 43133948
Alignment:
| Q |
16 |
ataaatgatgcacttaaaaaggccctctcctatgtgtatatgttactagggtcttgtttttgctatacaaacgtacaattagtgggattctcaccagaaa |
115 |
Q |
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| T |
43133706 |
ataaatgatgcacttaaaaaggccctctcctatgtgtatatgttactatggtcttgtttttgctatacaaacgtacaattagtgggattctcaccagaaa |
43133805 |
T |
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| Q |
116 |
tgacacca------ttgttaataagacacgtgatagccataaagttgttgctagcaaatcccccacacacacgtacgcacaaacatatatgaccatctcc |
209 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43133806 |
tgacacaaatacaattgttaataagacacgtgatagccataaagttgttgctagcaaatcccccacacacacgtacgcacaaacatatatgaccatctcc |
43133905 |
T |
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| Q |
210 |
ttccatccatatgcacctaattgggactttattcgtacaaatattgg |
256 |
Q |
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| T |
43133906 |
t----tccatatgcacctaattgggactttattcgtacaaatattgg |
43133948 |
T |
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