View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2571_high_13 (Length: 224)
Name: NF2571_high_13
Description: NF2571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2571_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 24563098 - 24563316
Alignment:
| Q |
1 |
gtttttgttcggaaatacacatgcacacaagtaaaaactatgtcattttgtgtttgataagattaagtccctcatttttatatggttgaaggcgagattt |
100 |
Q |
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| T |
24563098 |
gtttttgttcggaaatacacatgcacacaagtaaaaactatgtcattttgtggttgataagattaagtcactcacttttatatggttgaagacgagattt |
24563197 |
T |
|
| Q |
101 |
tttcaactcttatctttaacttttatggctggtg-------ccgttcaccattttgaacatagactaatggttatttctgttttaatgttctttattgct |
193 |
Q |
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| T |
24563198 |
tttcaacttttctctttaacttttatggctggtggcttagtccgttcaccattctgagcatatgctaatggtaatttctgttttcatgttctttattgct |
24563297 |
T |
|
| Q |
194 |
ctgtttccttgtaaatatt |
212 |
Q |
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||||||||||||||||||| |
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| T |
24563298 |
ctgtttccttgtaaatatt |
24563316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 4998034 - 4997990
Alignment:
| Q |
56 |
gataagattaagtccctcatttttatatggttgaaggcgagattt |
100 |
Q |
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| T |
4998034 |
gataagattaagtccctcacttttatgtggttgaaggcgaaattt |
4997990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 41156274 - 41156351
Alignment:
| Q |
135 |
ccgttcaccattttgaacatagactaatggttatttctgttttaatgttctttattgctctgtttccttgtaaatatt |
212 |
Q |
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| T |
41156274 |
ccgttcatcattatggacataggctaatagttatttctgttttactgttctttattgctctgtttccttgtaaatatt |
41156351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 34703575 - 34703534
Alignment:
| Q |
54 |
ttgataagattaagtccctcatttttatatggttgaaggcga |
95 |
Q |
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| T |
34703575 |
ttgataagattaagtccctcacttttatgtggttgaaggcga |
34703534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 44736063 - 44736027
Alignment:
| Q |
59 |
aagattaagtccctcatttttatatggttgaaggcga |
95 |
Q |
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| T |
44736063 |
aagattaagtccctcacttttatgtggttgaaggcga |
44736027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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