View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2571_high_3 (Length: 371)

Name: NF2571_high_3
Description: NF2571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2571_high_3
NF2571_high_3
[»] chr5 (2 HSPs)
chr5 (1-95)||(4175371-4175465)
chr5 (113-205)||(4175751-4175843)
[»] chr8 (1 HSPs)
chr8 (206-250)||(40948354-40948398)


Alignment Details
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 4175371 - 4175465
Alignment:
Q  1 aactcttggctgcgcaatagcccatacatttcataaatatttattgtaacaatgacaaaaaccaataatgataaatatctaaaataagatactac 95  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4175371 aactcttggctgcacaatagcccatacatttcataaatatttgttgtaacaatgacaaaaaccaataatgataaatatctaaaataagatactac 4175465  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 113 - 205
Target Start/End: Original strand, 4175751 - 4175843
Alignment:
Q  113 ttctatgaaattcataagcaatgtatgttgttagggactattctattgttagaaagagagtgccgataacattcttcttggtctcaattccta 205  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||    
T  4175751 ttctttgaaattcataagcaatgtatgttgttagggactattctattgttagaaagagagtgtcgataacactcttcttagtctcaattccta 4175843  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 40948354 - 40948398
Alignment:
Q  206 gggaatggattgtctcctgtataaatgcctccagttttctcctgt 250  Q
    ||||||||||| ||||| || ||||||||||||||||||||||||    
T  40948354 gggaatggattttctccggtgtaaatgcctccagttttctcctgt 40948398  T

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