View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2571_low_11 (Length: 268)
Name: NF2571_low_11
Description: NF2571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2571_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 4254824 - 4254902
Alignment:
| Q |
9 |
gattatactagatgaataaataaggtgttcagagtttgaagattaacccttacatattagaatacattgtctctgccaa |
87 |
Q |
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| T |
4254824 |
gattatactagatgaataaataaggtgttcagagtttaaaaatcaacccttacatattagaatacattgtctgtgccaa |
4254902 |
T |
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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 4254928 - 4254976
Alignment:
| Q |
115 |
atctatgaattatttttcatttccgaatgattttctaacgtgtaagctc |
163 |
Q |
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| T |
4254928 |
atctatgaattatttttcatttccgaatgattttctaacgtgtaagctc |
4254976 |
T |
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