View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2571_low_17 (Length: 213)
Name: NF2571_low_17
Description: NF2571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2571_low_17 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 4176273 - 4176485
Alignment:
| Q |
1 |
ttaaacaatgaataaagtgttatcattaaagtgatgatggtggataaataatagattgaggaactagagttgaaacctgtgaagggatagtgcagttgca |
100 |
Q |
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| T |
4176273 |
ttaaacaatgaataaagtgttatcattagagtgatgatggtggataaataatagattgaggaactagagttgaaacctgtgaagggatagtgcagttgca |
4176372 |
T |
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| Q |
101 |
aggcctgctatcccaccacccacgattacaacatgttcctttctgacatcagaagattgagccttgattgttaatttggaatatctgagggatccaattc |
200 |
Q |
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| T |
4176373 |
aggcctgctatcccaccacccacgattacaacatgttcctttctgacatcagaagattgagccttgattgttaatttggaatatctgagggatccaattc |
4176472 |
T |
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| Q |
201 |
tggcacgacaagg |
213 |
Q |
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| T |
4176473 |
tggcacgacaagg |
4176485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 64 - 212
Target Start/End: Original strand, 4172199 - 4172341
Alignment:
| Q |
64 |
ctagagttgaaacctgtgaagggatagtgcagttgcaaggcctgctatcccaccacccacgattacaacatgttcctttctgacatcagaagattgagcc |
163 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| || ||||||||||||||| || | ||||||||| || |
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| T |
4172199 |
ctagagttgaaacctgtgaagggatagagcagttgcaaggcctgcaatgccaccacccacaatgacaacatgttccttttgga---ctgaagattgaacc |
4172295 |
T |
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| Q |
164 |
ttgattgttaatttggaatatctgagggatccaattctggcacgacaag |
212 |
Q |
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| T |
4172296 |
ttga---ttaatttggaacttctgagagatccaattctggtatgacaag |
4172341 |
T |
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