View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2571_low_2 (Length: 390)
Name: NF2571_low_2
Description: NF2571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2571_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 31099794 - 31099436
Alignment:
| Q |
1 |
gttttgcttgtttcaattcctatgtttccatcatctgttttaagcttatttgagtcggcgacattcaagacggtctctatatgaagcaaagaaaaaggag |
100 |
Q |
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| T |
31099794 |
gttttgcttgtttcaattcctttgtttccatcatctgttttaagcttatttgagtcgacgacattcaagacggtctctatatgaagcaaagaaaaaggac |
31099695 |
T |
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| Q |
101 |
atgagaataaagtaagaaaattgtatcacaatcacaactgttatgcaatacacttactgtgatcatggtcatccgtgagttggtcttcttcgggtaaatt |
200 |
Q |
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| T |
31099694 |
atgagaatacagtaagaaaattgtatcacaatcacaactgttatgcaatacacatactgtgatcatggtcatc---------------ttcgggtaaatt |
31099610 |
T |
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| Q |
201 |
cttcatcacatatgacgcttcaggttcaagtgccgttttgtttatcagtttgtttagtgttttttgaggagcaagccgtttctttgaattgacattcaag |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31099609 |
cttcatcacagatgacgcttcaggttcaagtgccgttttgtttatcagcttgtttagtgttttttgaggagcaagccgtttctttgaattgacattcaag |
31099510 |
T |
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| Q |
301 |
acaggctcatcatcttcatctgaattcttggttctcttcttagatgacgcttgaagctcaagttgtgtctctat |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31099509 |
acaggctcatcatcttcatctgaattcttggttctcttcttagatgacgcttgaagctcaagttgtgtctctat |
31099436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 31141557 - 31141915
Alignment:
| Q |
1 |
gttttgcttgtttcaattcctatgtttccatcatctgttttaagcttatttgagtcggcgacattcaagacggtctctatatgaagcaaagaaaaaggag |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31141557 |
gttttgcttgtttcaattcctttgtttccatcatctgttttaagcttatttgagtcgacgacattcaagacggtctctatatgaagcaaagaaaaaggac |
31141656 |
T |
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| Q |
101 |
atgagaataaagtaagaaaattgtatcacaatcacaactgttatgcaatacacttactgtgatcatggtcatccgtgagttggtcttcttcgggtaaatt |
200 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
31141657 |
atgagaatacagtaagaaaattgtatcacaatcacaactgttatgcaatacacatactgtgatcatggtcatc---------------ttcgggtaaatt |
31141741 |
T |
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| Q |
201 |
cttcatcacatatgacgcttcaggttcaagtgccgttttgtttatcagtttgtttagtgttttttgaggagcaagccgtttctttgaattgacattcaag |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31141742 |
cttcatcacagatgacgcttcaggttcaagtgccgttttgtttatcagcttgtttagtgttttttgaggagcaagccgtttctttgaattgacattcaag |
31141841 |
T |
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| Q |
301 |
acaggctcatcatcttcatctgaattcttggttctcttcttagatgacgcttgaagctcaagttgtgtctctat |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31141842 |
acaggctcatcatcttcatctgaattcttggttctcttcttagatgacgcttgaagctcaagttgtgtctctat |
31141915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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